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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|83775133
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.36
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGRPPGHH PAAGRDDDLL QLEDTTPMYN PGQGPPVNDD HLLRQYNIDD SDYPQARPSV  60
   61 SYDQFVGGQA PPHSGAHATA SAHPPPQSGA YIGDPYMGAA SVSRTYSQTS GLDNYRRYSV 120
  121 DEYDDGYYHV DDHDDYMHSD HRVQEANQRN SILGLGGGLM GRAKHMLGMG QEYSDMNLPL 180
  181 TEAGARAARV DSTEHAEGAI PPSQKKSRKS DFKFGFGRKK VDPSTLGPRM IVLNNPPANA 240
  241 VHKFVDNHVS TAKYNIITFV PKFLYEQFSK YANLFFLFTA VLQQIPNVSP TNRYTTIGPL 300
  301 LIVLLVSAIK ELVEDYKRRS SDKSLNYSKT QVLKGSAFHE TKWIDVAVGD IVRVESEQPF 360
  361 PADLVLLASS EPEGLCYIET ANLDGETNLK IKQAIPETAH LVSPADLSRL SGRVRSEQPN 420
  421 SSLYTYEATL TMHAGGGEKE LPLAPDQLLL RGATLRNTPW VHGIVVFTGH ETKLMRNATA 480
  481 TPIKRTAVER MVNVQILMLV SILIALSVIS SVGDLIIRQT AADKLTYLDY GSTNAVKQFF 540
  541 LDIFTYWVLY SNLVPISLFV TIEIVKYAQA FLINSDLDIY YDKTDTPATC RTSSLVEELG 600
  601 QIEYIFSDKT GTLTCNMMEF KQCTIGGIQY GEDIPEDRRA TVEDGVEVGV HDFKKLRENL 660
  661 QGGHPTADAI HHFLTLLSTC HTVIPERSEK EPDKIKYQAA SPDEGALVEG AATLGYQFTN 720
  721 RRPRSVLFTV GGHEYEYELL AVCEFNSTRK RMSTIFRCPD GKIRIYTKGA DTVILERLNP 780
  781 DNPMVEVTLQ HLEEYASEGL RTLCLAMREV SEEEFQQWYQ IYDKAATTVG GNRADELDKA 840
  841 SELIEKDFYL LGATAIEDRL QDGVPDTIHT LQTAGIKVWV LTGDRQETAI NIGMSCKLIS 900
  901 EDMTLLIVNE ETSQATRENL TKKLQAVQSQ HASGEIEALA LVIDGRSLTF ALEKDMEKMF 960
  961 LDLAIQCKAV VCCRVSPLQK ALVVKLVKRH LKSLLLAIGD GANDVSMIQA AHVGVGISGL1020
 1021 EGLQAARSAD VSIAQFRYLR KLLLVHGAWS YHRISRVILY SFYKNIALYM TQFWYSFQNA1080
 1081 FSGEVIYESW TLSFYNVFFT VLPPFAMGIC DQFISARLLD RYPQLYQLGQ KGMFFKRHSF1140
 1141 WSWILNGFYH SLLLYLVSEL IFLWDLPQAD GKVAGHWVWG SALYTAVLAT VLGKAALITN1200
 1201 IWTKYTFIAI PGSMVIWLAF LPAYGYAAPA IGFSTEYYGT IPHLFKSPIF YLMAIVLPCV1260
 1261 CLLRDYAWKY AKRMYYPQHY HHVQEIQKYN VQDYRPRMEQ FQKAIRKVRQ VQRMRKQRGY1320
 1321 AFSQADDGAQ MRVVNAYDTT RGRGRYGEMT SSRALV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle