YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57092505
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTRCSAESV RGAGTDLHKL NPVAGVGRAS WSQVQQPQQP ARCNLQPISP WRWLFSVVVP  60
   61 VLIVSNGFKK KSLDHSGALG GLVVGFILTI ANFSFFTSLL MFFLSSSKLT KWKGEIKKRL 120
  121 DSEYKEGGQR NWVQVFCNGA VPTELALLYM IENGPGEIPI DFSKQYTASW MCLSLLAALA 180
  181 CSAGDTWASE VGPVLSKSPP RLITTWEKVP VGTNGGVTVV GLVSSLLGGT FVGITYFLTQ 240
  241 LVFVNDLDIS APQWPIIAFG GLAGLLGSVV DSYLGATMQF TGLDESTGMV VNSPANEVKY 300
  301 IAGKPILDNN AVNLFSSVVI ALLLPTAAWG FWPME

Type	Start	End	Confidence
Cytoplasmic	1	49	0.91
Transmembrane Helix	50	68	0.86
Non-Cytoplasmic	69	78	0.76
Transmembrane Helix	79	104	0.86
Cytoplasmic	105	166	0.78
Transmembrane Helix	167	188	0.75
Non-Cytoplasmic	189	215	0.57
Transmembrane Helix	216	239	0.85
Cytoplasmic	240	253	0.46
Transmembrane Helix	254	275	0.88
Non-Cytoplasmic	276	310	0.56
Transmembrane Helix	311	332	0.92
Cytoplasmic	333	335	0.49