YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73971044
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	58	0.89
Non-Cytoplasmic	59	133	0.96
Transmembrane Helix	134	158	0.84
Cytoplasmic	159	173	0.82
Transmembrane Helix	174	198	0.84
Non-Cytoplasmic	199	204	0.74
Transmembrane Helix	205	226	0.93
Cytoplasmic	227	237	0.82
Transmembrane Helix	238	257	0.87
Non-Cytoplasmic	258	260	0.60
Transmembrane Helix	261	284	0.70
Cytoplasmic	285	470	0.74
Transmembrane Helix	471	494	0.88
Non-Cytoplasmic	495	506	0.77
Transmembrane Helix	507	529	0.85
Cytoplasmic	530	540	0.70
Transmembrane Helix	541	563	0.80
Non-Cytoplasmic	564	574	0.69
Transmembrane Helix	575	596	0.92
Cytoplasmic	597	603	0.78
Transmembrane Helix	604	623	0.94
Non-Cytoplasmic	624	634	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLHQSTAIT FLEKWCLDKS LSGCRRHYNV RKKLKLIRIL GLLMGLVAIS TVSFSISAFS  60
   61 EPETQSTEEV IGASGPRAIH GYRQRTLLDL NDKILDYTPQ PPLSQEGKSE NTTDHAQGDY 120
  121 PRDIFSLEER RKGAIILHVI GMIYMFIALA IVCDEFFVPS LTVITEKLGI SDDVAGATFM 180
  181 AAGGSAPELF TSLIGVFIAH SNVGIGTIVG SAVFNILFVI GMCALFSREI LNLTWWPLFR 240
  241 DVSFYIVDLI MLIIFFLDNV IMWWESLLLL TAYFGYVVFM KFNVQVERWV KQMINRNKVV 300
  301 KVTAPEAQAK SSTARDKDEQ ALPAKPRLQR GGSSASLHNS LMRNSIFQLM IHTLDPLAEG 360
  361 RFREKASILH KIAKKKCQVD ENERQNGAAN HVGDTSTEVE MTTPSDASEP VQNGNLSHTI 420
  421 EATGEDEEDQ PLSLAWPSNP RKQVTFLIVF PIVFPLWITL PDVRKPSSRK FFPITFFGSI 480
  481 TWIAVFSYLM VWWAHQVGET IGISEEIMGL TILAAGTSIP DLITSVIVAR KGLGDMAVSS 540
  541 SVGSNIFDIT VGLPLPWLLY TIIHRFQPVA VSSNGLFCAI VLLFIMLLFV ILSIALCKWR 600
  601 MNKVLGFIMF GLYFVFLVVS VLLEDRILVC PVSI