YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73971046
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	58	0.89
Non-Cytoplasmic	59	133	0.96
Transmembrane Helix	134	158	0.84
Cytoplasmic	159	173	0.82
Transmembrane Helix	174	198	0.84
Non-Cytoplasmic	199	204	0.74
Transmembrane Helix	205	226	0.93
Cytoplasmic	227	237	0.82
Transmembrane Helix	238	257	0.87
Non-Cytoplasmic	258	260	0.59
Transmembrane Helix	261	284	0.70
Cytoplasmic	285	480	0.75
Transmembrane Helix	481	504	0.88
Non-Cytoplasmic	505	516	0.77
Transmembrane Helix	517	539	0.85
Cytoplasmic	540	550	0.70
Transmembrane Helix	551	573	0.80
Non-Cytoplasmic	574	584	0.69
Transmembrane Helix	585	606	0.92
Cytoplasmic	607	613	0.78
Transmembrane Helix	614	633	0.94
Non-Cytoplasmic	634	644	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLHQSTAIT FLEKWCLDKS LSGCRRHYNV RKKLKLIRIL GLLMGLVAIS TVSFSISAFS  60
   61 EPETQSTEEV IGASGPRAIH GYRQRTLLDL NDKILDYTPQ PPLSQEGKSE NTTDHAQGDY 120
  121 PRDIFSLEER RKGAIILHVI GMIYMFIALA IVCDEFFVPS LTVITEKLGI SDDVAGATFM 180
  181 AAGGSAPELF TSLIGVFIAH SNVGIGTIVG SAVFNILFVI GMCALFSREI LNLTWWPLFR 240
  241 DVSFYIVDLI MLIIFFLDNV IMWWESLLLL TAYFGYVVFM KFNVQVERWV KQMINRNKVV 300
  301 KVTAPEAQAK SSTARDKDEQ ALPAKPRLQR GGSSASLHNS LMRNSIFQLM IHTLDPLAEG 360
  361 RFREKASILH KIAKKKCQVD ENERQNGAAN HVEKIELPNS TSTEVEMTTP SDASEPVQNG 420
  421 NLSHTIEAAE AQTGEDEEDQ PLSLAWPSNP RKQVTFLIVF PIVFPLWITL PDVRKPSSRK 480
  481 FFPITFFGSI TWIAVFSYLM VWWAHQVGET IGISEEIMGL TILAAGTSIP DLITSVIVAR 540
  541 KGLGDMAVSS SVGSNIFDIT VGLPLPWLLY TIIHRFQPVA VSSNGLFCAI VLLFIMLLFV 600
  601 ILSIALCKWR MNKVLGFIMF GLYFVFLVVS VLLEDRILVC PVSI