YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73974942
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRCGSSGGF GGRLRNRSRA TAPAVQAVRL VVQGALSLLQ SSALAHRATL DVSSCDEESG  60
   61 TVRVRRPRPS LRGFRRARRG PLQLQLRLDP RKLDETIKAA SLKGALPGRA VPRAGGVGPA 120
  121 VSGIAPELRL SRVFLEARLA LGAAVQGPGR GCGPPMADAA PNGPQGAGAV QFMMTNKLDT 180
  181 AMWLSRLFTV YCSALFVLPL LGLHEAASFY QRALLANALT SALRLHQRLP HFQLSRAFLA 240
  241 QALLEDSCHY LLYSLIFVNS YPVTMSIFPV LLFSLLHAAT YTKKVLDAKG SNSLPLLRSI 300
  301 LDKLSANQQN ILKFIACNEI FLMPATVFML FSGQGSLLQP FIYYRFLTLR YSSRRNPYCR 360
  361 TLFNELRIVV EHVIMKPACP LFVRRLCLQS IAFISRLAPT VA

Type	Start	End	Confidence
Cytoplasmic	1	181	0.80
Transmembrane Helix	182	203	0.82
Non-Cytoplasmic	204	256	0.63
Transmembrane Helix	257	281	0.70
Cytoplasmic	282	319	0.60
Transmembrane Helix	320	343	0.66
Non-Cytoplasmic	344	402	0.56