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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73979526
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVKERRPYC SLTKSRREKE RRYTNSSADN EECRVPTQKS YSSSETLKAF DHDSSRLLYG  60
   61 NRVKDLVHRE TDEYTRQGQN FTLRQLGVCE PATRRGLAFC AEMGLPHRGY SISAGSDADT 120
  121 ENEAVMSPEH AMRLWGRGVK SGRSSCLSSR SNSALTLTDT EHENKETDHP GALQSHPRIR 180
  181 RPPLPPPHKQ HPAQHHPSIT SLNRNSLTNR RNQSPAPPAA LPAELQTTPE SVQLQDSWVL 240
  241 GSNVPLESRH GSRHPYLGML RDRLLLLQFL SLSREDEGIQ SWHFLFKTGT GTTPLFSTAT 300
  301 PGYTMASGSV YSPPTRPLPR NTLSRSAFKF KKSSKYCSWK CTALCAVGVS VLLAILLSYF 360
  361 IAMHLFGLNW QLQQTENDTF ENGKVNSDTM PTNTVSLPSG DNNNEAPHRR NQKQMSQGKL 420
  421 GGFTQENNTI DSGELDIGRR AIQEVPPGIF WRSQLFIDQP QFLKFNISLQ KDALIGVYGR 480
  481 KGLPPSHTQY DFVELLDGSR LIAREQRNLL EPERAGRQAR SVNLHEAGFI QYLDSGIWHL 540
  541 AFYNDGKNAE QVSFNTIVIE SVVECPRNCH GNGECVSGTC HCFPGFLGPD CSRAACPVLC 600
  601 SGNGQYSKGR CLCFSGWKGT ECDVPTTQCV DPQCGGRGIC IMGSCACNSG YKGENCEEAD 660
  661 CLDPGCSNHG VCIHGECHCS PGWGGSNCEL VKTMCPDQCS GHGTYLQESG SCTCDPNWTG 720
  721 PDCSNEICSV DCGSHGVCMG GSCRCEEGWT GAACSQRACH PRCAEHGTCK DGKCECSQGW 780
  781 NGEHCTIAHY LDKIVKEGCP GLCNSNGRCT LDQNGWHCVC QPGWRGAGCD VAMETLCTDS 840
  841 KDNEGDGLVD CMDPDCCLQS SCQNQPYCRG LPDPQDVISQ SLQSPSQQAA KSFYDRISFL 900
  901 IGSDSTHVIP GETPFNKSLA SVIRGQVLTA DGTPLIGVNV SFFHYPEYGY TITRQDGMFD 960
  961 LVANGGASLT LVFERSPFLT QYHTVWIPWN VFYVMDTLVM KKEENDIPSC DLSGFVRPNP1020
 1021 IIVSSPLSTF FRSSPEDSPI IPETQVLHEE TTIPGTDLKL SYLSSRAAGY KSVLKITMTQ1080
 1081 SVIPFNLMKV HLMVAVVGRL FQKWFPASPN LAYTFIWDKT DAYNQKVYGL SEAVVSVGYE1140
 1141 YESCLDLTLW EKRTAILQGY ELDASNMGGW TLDKHHVLDV QNGILYKGNG ENQFISQQPP1200
 1201 VVSSIMGNGR RRSISCPSCN GQADGNKLLA PVALACGIDG SLYVGDFNYV RRIFPSGNVT1260
 1261 SVLELRNKDF RHSSNPAHRY YLATDPVTGD LYVSDTNTRR IYRPKSLTGT KDLTKNAEVV1320
 1321 AGTGEQCLPF DEARCGDGGK AVEATLMSPK GMAIDKNGLI YFVDGTMIRK VDQNGIISTL1380
 1381 LGSNDLTSAR PLTCDTSMHI SQVRLEWPTD LAINPMDNSI YVLDNNVVLQ ITENRQVRIA1440
 1441 AGRPMHCQVP GVEYSVGKHA VQTTLESATA IAVSYSGVLY ITETDEKKIN RIRQVTTDGE1500
 1501 ISLVAGIPSE CDCKNDANCD CYQSGDGYAK DAKLSAPSSL AASPDGTLYI ADLGNIRIRA1560
 1561 VSKNKPFLNS MNFYEVASPT DQELYIFDIN GTHQYTVSLV TGDYLYNFSY SNDNDITAVT1620
 1621 DSNGNTLRIR RDPNRMPVRV VSPDNQVIWL TIGTNGCLKS MTAQGLELVL FTYHGNSGLL1680
 1681 ATKSDETGWT TFFDYDSEGR LTNVTFPTGV VTNLHGDMDK AITVDIESSS REEDVSITSN1740
 1741 LSSIDSFYTM VQDQLRNSYQ IGYDGSLRII YASGLDSHYQ TEPHVLAGTA NPTVAKRNMS1800
 1801 LPGENGQNLV EWRFRKEQAQ GKVNVFGRKL RVNGRNLLSV DFDRTTKTEK IYDDHRKFLL1860
 1861 RIAYDTSGHP TLWLPSSKLM AVNVTYSSTG QIASVQRGTT SEKVDYDGQG RIVSRVFADG1920
 1921 KTWSYTYLEK SMVLLLHSQR QYIFEYDMWD RLSAITMPSV ARHTMQTIRS IGYYRNIYNP1980
 1981 PESNASIITD YNEEGLLLQT AFLGTSRRVL FKYRRQTRLS EILYDSTRVS FTYDETAGVL2040
 2041 KTVNLQSDGF ICTIRYRQIG PLIDRQIFRF SEDGMVNARF DYSYDNSFRV TSMQGVINET2100
 2101 PLPIDLYQFD DISGKVEQFG KFGVIYYDIN QIISTAVMTY TKHFDAHGRI KEIQYEIFRS2160
 2161 LMYWITIQYD NMGRVTKREI KIGPFANTTK YAYEYDVDGQ LQTVYLNEKI MWRYNYDLNG2220
 2221 NLHLLNPSNS ARLTPLRYDL RDRITRLGDV QYRLDEDGFL RQRGTEIFEY SSKGLLTRVY2280
 2281 SKGSGWTVIY RYDGLGRRVS SKTSLGQHLQ FFYADLTYPT RITHVYNHSS SEITSLYYDL2340
 2341 QGHLFAMEIS SGDEFYIASD NTGTPLAVFS SNGLMLKQIQ YTAYGEIYFD SNIDFQLVIG2400
 2401 FHGGLYDPLT KLIHFGERDY DILAGRWTTP DIEIWKRIGK DPAPFNLYMF RNNNPASKIH2460
 2461 DVKDYITDVN SWLVTFGFHL HNAIPGFPVP KFDLTEPSYE LVKSQQWDDV PPIFGVQQQV2520
 2521 ARQAQAFLSL GRMAEVQVSR RRGGGAPSWL WFATVKSLIG KGVMLAVSRG RVQTNVLNIA2580
 2581 NEDCIKVAAV LNSAFYLENL HFTIEGKDTH YFIKTTTPES DLGTLRLTSG RKALENGINV2640
 2641 TVSQSTTVVN GRTRRFADVE MQFGALALHV RYGMTLDEEK ARILEQARQR ALARAWAREQ2700
 2701 QRVRDGEEGA RLWTEGEKRQ LLSAGKVQGY DGYYVLSVEQ YPELADSANN IQFLRQSEIG2760
 2761 KR

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