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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73979548
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSLDLLYL LLLLLQHFGD GDGSPSLAKI PLQFTHFQYN VTVHENSAAK TYVGHPVKMG  60
   61 IYLTDPSWEL RYKIVSGDNE NLFKAEEYVL GDFCFLRIRT KGGNTAILNR EVKDHYTLIV 120
  121 KAVEKNTNAE ARAKVRVQVL DTNDLRPLFS PTSYSVSLPE NTAIRTSIAR VSATDADIGT 180
  181 NGEFYYSFKD RTDMFAIHPT SGTVVLTGRL DYAETKLYEM EILAVDRGMK LYGSSGISSM 240
  241 AKLTVHVEQA NGCAPVITAV TLSPSELDKD PTYAIVTVDD CDQGPNGEIA SLTIVAGDLL 300
  301 QQFKTVRSSP GSKEYKVKAV GGVDWDSHPF GYNLTLQAKD KGTPPQFSSV KVIHVASPQF 360
  361 KAGPVKFEKD VYRVEISEFA PSHTPVVMVK ATPSYSHLRY VFKSTPGKAK FGLNHNTGLI 420
  421 SILEPVKRQQ ASHFELEVTT SDRRASTRVL VKVLSANSNP PEFTQTAYKA SFDENVPIGT 480
  481 AVMSVSAVDP DEGENGYVTY SIANLNHVPF VIDHFTGAVS TSENLDYELM PRVYTLRIRA 540
  541 SDWGLPYRRE VEVLATVTLN NLNDNTPLFE KINCEGTIPR DLGVGEQITT VSAIDADELQ 600
  601 LVRYQIEAGN ELDLFSLNPN SGVLSLKQSL LEGLGTRVSF HSLRITATDG ENFATPLYIN 660
  661 LTVAASRKPV HLQCEETGVA KMLAEKLLQA NKLHSQGEVE DVFFDSHSVN AHTPQFRSSL 720
  721 PTGIEVKENH PVGSNIIVLN ATDLDTGFNG KLVYAISGGN EDSCFIIDME TGMLKILSPL 780
  781 DRETTDKYTL NITVSDLGIP QKAAWRLIDI RVLDANDNPP EFLQESYFVE VSEDKEINSE 840
  841 IIQVEATDKD LGPNGHVTYS ILTDTDKFSI DSMTGVVKIV YPLDREVQQV HYLKIEARDQ 900
  901 AREEPQLLST VLLKVSLEDV NDNPPKFIPP NYRVKVREDL PEGTIIMWLE AYDPDLGQSS 960
  961 QVRYSLLDHG EGHFDVDKLS GAVRIVQHLD FEKKQVYNLT VRAKDKGKPV SLSSTCYVEV1020
 1021 EVIDVNENLH SPVFSSFVEK GVVKEDVPVG SSVMTVSARD EDTGRDGEIR YSIRDGSGVG1080
 1081 VFKIDEETGV IETSDRLDRE STSHYWLTVY AADRGVVPLS SFIEIYIEVE DVNDNAPQTS1140
 1141 EPVYYPEIIE NSPKDVSVVQ IEAFDPDSSS NDKLMYKITS GNPQGFFSIH PKTGLITTTS1200
 1201 RKLDREQQDE HILEVTVTDN GSPPKSTIAR VIVKILDEND NKPQFLQKFY KIRLPERERP1260
 1261 ERERNAKREP IYRVIATDKD DGPNAEISYS IEDGNEHGKF FIEPKTGVVS SKKFSGAGEY1320
 1321 DILSIKAVDN GRPQKSSTTR LHIEWISKPK PSVEPISFEE PFFTFTVMES DPVAHMIGVI1380
 1381 TVEPPGTPLW FDIIGGNYDS DFDVDKGTGT IIVAKPLDAE QKSNYNLTVE ATDGTTTILT1440
 1441 QVFIQVIDTN DHRPQFSASK YEVVIPEDTI PETEILQISA VDKDEKNKLI YTLQSSSDPL1500
 1501 SLKKFRLDPA TGSLSTSETL DHEATHQHVL TVMVRDQDVP VKRNFARIVV NVSDTNDHAP1560
 1561 WFTSSSYEGR VYESAAVGSV VLQVTALDKD KGKNAEVLYS IESGNIGNSF TIDPVLGSIK1620
 1621 TARELDRNSQ VEYDLMVKAT DQGNPPMSEI ASVHVSVTIA DNASPKFTSK EYSVEISETI1680
 1681 GVGSFVGMVT AHSQSSVVYE IKDGNVAEVF DINPHSGSII TQKALDFETL PVYTLIIQGT1740
 1741 NMAGLSTNTT VLVHLQDEND NLPVFMQSEY VGLISESASI NSVVLTDKNA PLVIRATDAD1800
 1801 KESNALLVYH IVEPSIHKYF AIDSSTGAIH TVLSLDYEET STFHFTVQVH DMGTPRLFAE1860
 1861 YAANVTIRVI DINDCPPVFS KSLYEASLLL PTYRGVKVIT VNATDADSSA FSQLMYSITE1920
 1921 GNIGEKFFMD YRTGTITVQN TTQLRSRYEF TVRVSDGRFV SFTSVKINVK ESKESQLKFT1980
 1981 QDVYSAVVKE NSTEARTLAV ITAIGNPINE PLFYQILNPD RRFKISRTSG VLSTTGIPFD2040
 2041 REQQEAFDVV VEVTQEQKPS VVAHVVVKVV VEDQNDNAPV FVNLPYYAVV KVDTVVGHVI2100
 2101 RHVTAVDRDS GRNGEVHYYL KEHHEHFQIG SSGEISLKKQ FEPDTLNKEY LITVVAKDGG2160
 2161 NPAFSAEVIV PITVMNKAMP VFEKPFYSAE VPENIQMHSP VVHIQANSPE GLKVFYSITD2220
 2221 GDPFSQFTIN FNTGVINVIA PLDFESHPAY KLSIRATDSL TGAHAEVFVD IIVEDINDNP2280
 2281 PVFVQQSYAT TLSEASVIGT SVIQVRATDS DSEPNRGISY HMFGNHSKSH DHFHIDSSTG2340
 2341 LISLVRALDY EQFQQHKIFV RAVDGGMPPL SSDVIVTVDV TDLNDNPPLF DQQIYEAKIS2400
 2401 EHAIHGHFVT CVKAYDADSS DIDKLDYSIL SGNDHKNFVI DSETGIITLS NLRRHTLKPF2460
 2461 YSLNVSVSDG VFRSSAQVHI TVIGGNLHSP VFLQSEYEVE LAENAPLHTL VIEVKATDGD2520
 2521 SGIYGHITYH IVNDFAKDRF YTNERGQIFT LEKLDRETPA EKVISIRLMA KDAGGKVAFC2580
 2581 TINVILTDDN DNAPQFRATK YEVDIGSNAP KGTSVIKVLA SDADEGSNAD VTYAIEADSE2640
 2641 SVKENLEINK LSGIITTKES LIGLENEFFT FFVRAVDSGS PSKESVVPVY VKILPPEIQL2700
 2701 PKFSEPFYTY TVSEDMPIGT EIDLIRAEHS GTVLYSLIKG NTPESNRDEF FVIDRQSGRL2760
 2761 KLEKSLDHET TKWYQFSILA RCTHEDYEVV ASVDVSIQVK DANDNSPVLE SNPYEAFIVE2820
 2821 NLPAGSRVIQ IRASDLDSGT NGQVMYSLDQ SQSVEVIESF AINMETGWIS TLKELDHEKR2880
 2881 DRYQIQVVAS DHGEKVQLSS TAIVDVTVTD VNDSPPRFTA EIYKGTVSED DPPGGVIAIL2940
 2941 STTDADSEEI NRQVAYYITG GDPLGQFAIE NIQNEWKVYV KKPLDREKRD NYLLTITATD3000
 3001 GTFSSKAIVE VKVLDANDNS PICEKTLYSD TIPEDAFPGK LIMQVSATDA DIRSNAEITY3060
 3061 TLFGPGAEKF KLNPDTGELK TLAPLDREEQ EVYNLLVKAT DGGGRFCEAN IVLTVEDVND3120
 3121 NAPEFSADPY TITVFENTEP GTPLTRVQAT DADAGCLGLN RKISYSLINS ADGQFSINEL3180
 3181 SGIIQLEKPL DRELQAVYTL TLKAVDQGLP RRLTATGTLV VSVLDINDNP PVFEYREYGA3240
 3241 TVSEDILIGT EVLQVYAASR DIEANAEITY SIISGNEHGK FSIDSKTGAI FIIETLDYES3300
 3301 SHEYYLTVEA TDGGTPSLSD VATVNINVTD INDNSPVFSQ DTYTAVISED ALLEQSVITV3360
 3361 MADDTDGPSN SRIRYSIIDG NQGSPFTIDP AKGEVKVTKL LDRETISGYT LTVQASDNGS3420
 3421 PPRVNTTTVN IDVSDVNDNA PVFSKGNYSV IIQENKPVGF SVLQLIVTDK DSSHNGPPFF3480
 3481 FTIVSGNDDG AFEVNQQGVL LTSGIIKRKM KDRYLLHVKV ADNGKPQLSS LTYIDIKVIE3540
 3541 ESIYPPAILP LEIFITAFGE EYSGGVIGKI HATDQDVYDT LSYSLDPQMD KLFSVSSTGG3600
 3601 KLIAHKKLDI GQYLLNVSVT DGKFTTVADI TVHIRQITQE MLNHTIAIRF ANLTPEEFVG3660
 3661 DYWRNFQRAL RNILGARRND IQIVSLQPSE PHPHLDVLLF VEKSGGAHVS TKQLLHKINS3720
 3721 SVTDIEEIIG VRILDVFQKL CAGLDCPWKF CDEKVTVDEN VMSTHSTARL SFVTPRHHRT3780
 3781 AVCLCTEGRC PLVHHGCEDS PCPEGSECIT EPGEDRYTCV CPGGRFGQCP GSSSVTFTGN3840
 3841 SFVKYRLMEN ENKLEMKLTM RLRTYSAHAV VMYARGTDYS ILEIHNGRLQ YKFDCGSGPG3900
 3901 IVSVQSIQVN DGLWHAVSLE VNGNYARLVL DQVHTASGTA PGTLKTLNLD NHVFFGGHIR3960
 3961 QQGTRHGRSA QVGNGFRGCM DSIYLNGQEL PLNNKPRSYA HVEEWVDVSP GCLLTATEDC4020
 4021 SSSPCQNGGI CHPSPTGGYY CKCSALFIGT YCELSVNPCS SNPCLYGGTC IVDNGDFVCQ4080
 4081 CRGLYTGQRC QLSPYCKDEP CKNGGTCFDS LDGAVCQCDS GFRGERCQSD VDECAASPCR4140
 4141 NGALCENTHG SYHCNCSQDY RGRHCEDAAP NQYVSTPWNI GLGEGIGILV FIVGIFLLVM4200
 4201 VFVLCRKMRS RKKQQQATPE DKHLGPATAF LQRPYFDSKL NKNIYSDIPP QVPVRPISYT4260
 4261 PSIPSDSRNN LDRNSFEGSA IPEHPEFSTF NPESGHGHRK AVAVCSVAPN LPPPPPSNSP4320
 4321 SDSDSIQKPS WDFDYDTKVV DLDPCLSKKP LEEKPSHPYS ARESLSEVQS LSSFQSESCD4380
 4381 DNASIVTVIH LVNAVVDTKD NEICSLFYQG YHWDTSDWMP SVPLPDIQEF PNYEVIDEQT4440
 4441 PLYSADPNAI DTDYYPGGYD IESDFPPPPE DFPVPDELPP LPPEFSEQFE SIHPPRDMPA4500
 4501 AGSLGSSSRN RQRFNLNQYL PNFYPVDMSE PQKTGSGENS TCREPYAPYP PGYPRNFEAP4560
 4561 TVENMPMSVY ASTASCSDVS ACCEVESEVM MSDYESGDDG HFEEVTVPPL EAQQHTQTLQ4620
 4621 DSVLDGCRDI QLFVAFNVKG PVATPGGSPL HSPPSPSPLT QLSNFLKVNV GCSFPFADWR4680
 4681 SVYFLIALHQ RH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle