YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73980664
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGARFEKQSN RRRTVSSGLV VTKAAETATS QNQYQDLLRF WNRMLSTEEF ALRGTFKGYC  60
   61 GQRLNQALGG RQPRRRAEKA RRSAGRKGRV LRRKSCPGLV TWEGLDASAG IMALWRAYQR 120
  121 ALTVHPWKVQ VLTAGSLMGL GDIISQQLVE KRGLRGHQTG RTLTMAFLGC GFVGPVVGGW 180
  181 YRVLDRLIPG TAKADALKKM LLDQVTLISL PRGGFAPCFL GCFLPLVGAL NGLSAQDNWA 240
  241 KLRRDYPDAL LTNYYLWPAV QLANFYLVPL HYRLAVVQCV AVIWNSYLSW KAHRL

Type	Start	End	Confidence
Cytoplasmic	1	98	0.80
Transmembrane Helix	99	117	0.53
Non-Cytoplasmic	118	161	0.49
Transmembrane Helix	162	184	0.88
Cytoplasmic	185	207	0.50
Transmembrane Helix	208	230	0.81
Non-Cytoplasmic	231	268	0.54
Transmembrane Helix	269	288	0.69
Cytoplasmic	289	295	0.76