YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73980953
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPAVLASHN LPHHEPISFG IDQILSCPEP PGSGLGPGRA GQGHGESAAF SGGFHGTSSY  60
   61 GPAGSLAPLP GSSGMGPGGV IRVPAHRPMP VPPPAGGAPA VPGPSGLGGA GGLAGLTFPW 120
  121 MDSGRRFAKD RLTAALSPFS GTRRIGHPYQ NRTPPKRKKP RTSFSRSQVL ELERRFLRQK 180
  181 YLASAERAAL AKALRMTDAQ VKTWFQNRRT KWRGPKAKEP QGERHPPGRL LLHLQQDALP 240
  241 RPLRPPLPPD PLCLHNSSLF ALQNLQPWAE DNKVASVSGL ASVV

Type	Start	End	Confidence
Cytoplasmic	1	51	0.63
Transmembrane Helix	52	69	0.47
Non-Cytoplasmic	70	99	0.77
Transmembrane Helix	100	121	0.68
Cytoplasmic	122	284	0.70