YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73980986
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWPSGKARF LVVKQARAVS PGCQSEAEGR GHPDTALDIQ GCCGLRAVRE DTSSLTLLRL  60
   61 ETPGPWSPMA PYHIRKYQER DRPRVLDLFS KGMEEHAPTT FCHVLKLPRT LALLLGVPLA 120
  121 LFLASGSWLL VFVASLALLT ALRFFSKYPW VQFKVLCLRS DLSDITKSYL GEPGSCFWVA 180
  181 EAAGQVVGMV GVLPAADCPL RREQLQLFHL CVASECRGQG VAKALLRTVL QFARDQGYSQ 240
  241 VVLHTTMLQR SAVALYQRMG FQKTGQFFPS LNWRLFAIPS CVFVYPLPSA QASQAQGQAG 300
  301 GP

Type	Start	End	Confidence
Cytoplasmic	1	112	0.87
Transmembrane Helix	113	141	0.82
Non-Cytoplasmic	142	177	0.79
Transmembrane Helix	178	196	0.52
Cytoplasmic	197	270	0.67
Transmembrane Helix	271	287	0.40
Non-Cytoplasmic	288	302	0.60