YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73981933
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.97
Transmembrane Helix	83	105	0.81
Non-Cytoplasmic	106	110	0.52
Transmembrane Helix	111	131	0.82
Cytoplasmic	132	137	0.69
Transmembrane Helix	138	157	0.78
Non-Cytoplasmic	158	185	0.60
Transmembrane Helix	186	211	0.80
Cytoplasmic	212	213	0.44
Transmembrane Helix	214	234	0.70
Non-Cytoplasmic	235	268	0.67
Transmembrane Helix	269	285	0.90
Cytoplasmic	286	297	0.75
Transmembrane Helix	298	317	0.82
Non-Cytoplasmic	318	348	0.76
Transmembrane Helix	349	373	0.81
Cytoplasmic	374	384	0.80
Transmembrane Helix	385	407	0.91
Non-Cytoplasmic	408	419	0.70
Transmembrane Helix	420	442	0.88
Cytoplasmic	443	479	0.82
Transmembrane Helix	480	507	0.91
Non-Cytoplasmic	508	793	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAPRSRLEP PPLPEYSCSY VVSRPVFSEL AFQQQHERRL QERKTLRESL ARGCSCSRKR  60
   61 GLGVLKTLLP ILDWLPKYRI KEWLLSDIIS GVSTGLVGTL QGMAYALLAA VPVGYGLYSA 120
  121 FFPILTYFIF GTSRHISVGP FPVVSLMVGS VVLSMAPDEH FHTSSGNGTA FNATVIDYAA 180
  181 RDAARVLIAS TLTLLVGIIQ LIFGGLQIGF IVRYLADPLV GGFTTAAAFQ VLVSQLKIVL 240
  241 NVSTKNYNGV LSIIYTLIEI FQNVGNTNLA DFIAGLLTII ICMAVKEVND RFKHKIPVPI 300
  301 PIEVIVTIIA TAISYAANLE KNYNAGIVKS IPRGFLPPVL PPVSLFSEML AASFSIAVVA 360
  361 YAIAVSVGKV YAIKYDYAID GNQEFIAFGI SNIFSGFFSC FVATTALSRT AVQESTGGKT 420
  421 QIAGIISAGI VMIAIVALGK LLEPLQKSVL AAVVIANLKG MFMQVCDIPR LWRQNKIDAV 480
  481 IWVFTCIASI ILGLDLGLLA GLMFGLLTVV LRVQFPSWNG LGSIPSTDIY KSTTNYKNIE 540
  541 ELEGVKILRF SSPIFYGNVD GFKKCIKSTV GFDAIRVYNK RLKALRKIQK LIKKGQLRAT 600
  601 KNGIIRDAGS SNDAFEPDED TEDPEDPDVP TKEIEIRVDW NSELPVKMNV PKVPIHSLVL 660
  661 DCGAVSFLDV VGVRSLRMIV KEFQRIDVNV YFASLQDHVI EKLEKCGFFN DNIRKDIFFL 720
  721 TVHDAVLHLQ NQVKSREVQD SILETITLIQ DCKDPLELME AELIEEELDV QDEILFTSAL 780
  781 LSFVNASLLW IRL