YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73981935
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPCRSCTPP PAPLPAASCP PAAASDVPRV GRAELRLEPG GRQAGCEEKE MTLQWVAVAT  60
   61 FLYAEIGLIL IFCLPFIPPQ RWQKIFSFNV WGKIATFWNK AFLTIIILLI VLFLDAVREV 120
  121 RKYSSIPAIE KGLTTRPGAY EHAQMKLFRS QRNLYISGFS LFFWLVLRRL VTLITQLAKE 180
  181 LSNKGVLKTQ AENTNEAAKK FMEENERLKQ LLKSYVKEEE HILETENKKL VEDQEKLKTE 240
  241 LKKTSEALSK AQKDVMTMRM QSERLSKEYD RLLKEHSELQ VGDLHFMNLN FMK

Type	Start	End	Confidence
Cytoplasmic	1	54	0.87
Transmembrane Helix	55	78	0.86
Non-Cytoplasmic	79	95	0.83
Transmembrane Helix	96	117	0.90
Cytoplasmic	118	152	0.87
Transmembrane Helix	153	172	0.75
Non-Cytoplasmic	173	293	0.82