YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73982643
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.95
Transmembrane Helix	14	37	0.86
Non-Cytoplasmic	38	74	0.96
Transmembrane Helix	75	96	0.92
Cytoplasmic	97	104	0.85
Transmembrane Helix	105	124	0.92
Non-Cytoplasmic	125	132	0.77
Transmembrane Helix	133	154	0.93
Cytoplasmic	155	164	0.74
Transmembrane Helix	165	184	0.92
Non-Cytoplasmic	185	191	0.71
Transmembrane Helix	192	214	0.89
Cytoplasmic	215	301	0.96
Transmembrane Helix	302	323	0.87
Non-Cytoplasmic	324	355	0.91
Transmembrane Helix	356	375	0.90
Cytoplasmic	376	417	0.94
Transmembrane Helix	418	438	0.91
Non-Cytoplasmic	439	450	0.60
Transmembrane Helix	451	470	0.71
Cytoplasmic	471	477	0.51
Transmembrane Helix	478	501	0.78
Non-Cytoplasmic	502	508	0.75
Transmembrane Helix	509	532	0.89
Cytoplasmic	533	558	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTLQQAYR RRWWMACTAV LENLFFSAVL LGWGSLLIML KEEGFYSSLC PANTTNATRD  60
   61 EQRKWLSCDR QEEMLNLGFT IGSFVLSATT LPLGILMDRF GPRPTRLVGS ASFAASCTLM 120
  121 ALASRDTRVL SPLIFLALSL NGFGGICLTF SSLTLPNMFG NLRSTFMALM IGSYASSAIT 180
  181 FPGIKLIYDA GVSFVVIMFT WSGLACLIFL NCALNWPSEA FPAPEEVNYT KKIKLSGLAL 240
  241 DHKVTGDRFY THVTIVGQRL SQKAPSLEEG ADVFISSQDV RGASGSPPEK SIPFRQSLCS 300
  301 PIFLWSLLTM GMTQLRVIFY MAAMNKMLEY LVTGGQEHET DILRKQAAET VGFYSSIFGA 360
  361 MQLLCLLTCP LIGYIMDWRI KDCVDAPSEG TALGDAREGA ATKSARPRYR KIQKLTNAIN 420
  421 AFTLTNFLLV GFGITCLINS LHLQFVTFVL HTMVRGFYHS ACGSLYAAVF PSNHFGTLTG 480
  481 LQSLISAVFA LLQQPLFMAM VGPLKGEPFW VNLGLLLFSL LGFLLPSYLF YYRARLQREY 540
  541 VAYWEGPKKV LGSSEVTA