YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73985461
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	97	0.81
Transmembrane Helix	98	117	0.85
Non-Cytoplasmic	118	123	0.60
Transmembrane Helix	124	143	0.73
Cytoplasmic	144	163	0.90
Transmembrane Helix	164	186	0.92
Non-Cytoplasmic	187	199	0.83
Transmembrane Helix	200	222	0.87
Cytoplasmic	223	233	0.86
Transmembrane Helix	234	258	0.79
Non-Cytoplasmic	259	265	0.63
Transmembrane Helix	266	285	0.91
Cytoplasmic	286	415	0.97
Transmembrane Helix	416	435	0.92
Non-Cytoplasmic	436	454	0.83
Transmembrane Helix	455	476	0.87
Cytoplasmic	477	484	0.86
Transmembrane Helix	485	504	0.91
Non-Cytoplasmic	505	511	0.68
Transmembrane Helix	512	531	0.87
Cytoplasmic	532	542	0.81
Transmembrane Helix	543	565	0.88
Non-Cytoplasmic	566	579	0.75
Transmembrane Helix	580	600	0.93
Cytoplasmic	601	622	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDALTHTPS PGLASLPPSS LLALAHYTTV ITTPIPKAPS LLALESKGRQ SESGPLRDAY  60
   61 LRATRRVGGG ISGGLSPGAR AMGSQEVLGQ AARLASSGLL LQVLFRLITF VLNAFILRFL 120
  121 SKEIVGIVNV RLTLLYSTTI FLAREAFRRA CLSGGAQRDW SQTFNLLWLT VPLGVFWSLL 180
  181 LGWVWLHLLE VPDPNVVPHY GTGVVVFGLS AVVELLGEPF WVLAQTQMFV KLKVIAESLS 240
  241 VILKSVLTAF LVLWLPHWGL YIFSLAQLFY TALLVLCYVT YFTKLLGSSE STKQRALPVS 300
  301 RMTDLLPSIT RSGAFVNWKE AKLTWSFFKQ SFLKQILTEG ERYIMTFLNV LNFGDQGVYD 360
  361 IVNNLGSLVA RLIFQPIEES FYIFFAKVLE RGKDATLQKQ EDVAVAAAVL ESLLKLALLA 420
  421 GLTITIFGFA YSQLALDIYG GAMLSSGSGP VLLRSYCLYV LLLAINGVTE CFTFAAMSKE 480
  481 EVDRYNFTML ALSSSFLVLS YLLTQWCGSV GFILANCFNM GIRITQSLCF IHRYYRKSPH 540
  541 RPLAGLYLSP ALLGAFVLSG GITGVSEVFL CCEQGWLARL AHVAVGAFCL GMTFGTAFLT 600
  601 ETKLIHFVRT QLRVSRLADK TS