YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73991700
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILSDIALS CMAGKGQWHT TPAEALTLES ETEAKVDGET ASDSESRAEA APLSASTDDT  60
   61 PEVLNRALSN LSSRWKNWWV RGILTLAMIA FFFIIIYLGP MVLMIIVMCV QIKCFHEIIT 120
  121 IGYNVYHSYD LPWFRTLSWY FLLCVNYFFY GETVTDYFFT LVQREEPLRI LSKYHRFISF 180
  181 TLYLIGFCMF VLSLVKKHYR LQFYMFGWTH VTLLIVVTQS HLVIHNLFEG MIWFIVPISC 240
  241 VICNDIMAYM FGFFFGRTPL IKLSPKKTWE GFIGGFFATV VFGLLLSYVM SGYRCFVCPV 300
  301 EYNNDTNSFT VDCEPSDLFR LQEYNIPEVI QSVIGLTTVW MYPFQIHSIA LSTFASLIGP 360
  361 FGGFFASGFK RAFKIKDFAN TIPGHGGIMD RFDCQYLMAT FVNVYIASFI RGPNPSKLIQ 420
  421 QFLTLRPDQQ LHIFNTLRSH LADKGMLTVA TEDE

Type	Start	End	Confidence
Cytoplasmic	1	77	0.92
Transmembrane Helix	78	98	0.91
Non-Cytoplasmic	99	102	0.65
Transmembrane Helix	103	125	0.64
Cytoplasmic	126	132	0.60
Transmembrane Helix	133	151	0.76
Non-Cytoplasmic	152	176	0.75
Transmembrane Helix	177	195	0.95
Cytoplasmic	196	203	0.76
Transmembrane Helix	204	224	0.83
Non-Cytoplasmic	225	231	0.82
Transmembrane Helix	232	255	0.92
Cytoplasmic	256	270	0.86
Transmembrane Helix	271	290	0.93
Non-Cytoplasmic	291	345	0.95
Transmembrane Helix	346	366	0.94
Cytoplasmic	367	454	0.84