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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|73991998
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIQKKEKQL SNLKVLNHSP MSDASVNFDY KSPSPFEHST DQEEKIEDVA SHCLSQKDLY  60
   61 AAEEEAETLF PRKMTSHNGM EDSGGGGTGV KKKRKKKDPG EQDGAAKGSK DREPKPKRKR 120
  121 EPREPKEPRK AKEPKRAKEP KEPKQKDGAK KARKPREASG TKEAKEKRSG ADTAARTKSK 180
  181 KASKEQGPTP VERKKKGKRK SETTVESLEL DQGLPNSSLR SPEESTESAD SQKRRSGRQV 240
  241 KRRKYNEDLD FKVVDDDGET IAVLGAGRTS ALSASTLAWQ AEEPPEDDAN IIEKILASKT 300
  301 VQEVHPGEPP FDLELFYVKY RNFSYLHCKW ATMEELEKDP RIAQKIKRFR NKQAQMKHIF 360
  361 TEPDEDLFNP DYVEVDRVLE VAHTKDAETG EEVTHYLVKW CSLPYEESTW ELEEDVDPAK 420
  421 VKEFESLQVL PEIKHVERPA SDSWQKLEKS REYKNSNQLR EYQLEGMNWL LFNWYNRKNC 480
  481 ILADEMGLGK TIQSITFLSE IFLRGIHGPF LIIAPLSTIT NWEREFRTWT EMNAIVYHGS 540
  541 QISRQMIQQY EMVYRDAQGN PLSGVFKFHV VITTFEMILA DCPELKKIHW SCVIIDEAHR 600
  601 LKNRNCKLLE GLKLMALEHK VLLTGTPLQN SVEELFSLLN FLEPSQFPSE TAFLEEFGDL 660
  661 KTEEQVKKLQ SILKPMMLRR LKDDVEKNLA PKQETIIEVE LTNIQKKYYR AILEKNFSFL 720
  721 TKGANQHNMP NLINTMMELR KCCNHPYLIN GAEEKILEDF RKTHSPDAPD FQLQAMIQAA 780
  781 GKLVLIDKLL PKLIAGGHKV LIFSQMVRCL DILEDYLIQR RYTYERIDGR VRGNLRQAAI 840
  841 DRFCKPDSDR FVFLLCTRAG GLGINLTAAD TCIIFDSDWN PQNDLQAQAR CHRIGQSKAV 900
  901 KVYRLITRNS YEREMFDKAS LKLGLDKAVL QDINRKGSTN GVQQLSKMEV EDLLRKGAYG 960
  961 ALMDEEDEGS KFCEEDIDQI LQRRTHTITI QSEGKGSTFA KASFVASGNR TDISLDDPNF1020
 1021 WQKWAKIAEL DTEAKNEKES LVIDRPRVRK QTKHYNSFEE DELMEFSELD SDSDERPTRS1080
 1081 RRLNDKTRRY LRAECFRVEK NLLIFGWGRW KDILTHGRFK WHLNEKDMEM ICRALLVYCV1140
 1141 KHYKGDEKIK SFIWELITPT KDGQAQTLQN HSGLSAPVPR GRKGKKTKNQ LLLPELKNAD1200
 1201 WLATCNPEVV LHDDGYKKHL KQHCNKVLLR VRMLYYLKAE ILGEAAEKAF EGTPARELEV1260
 1261 PLPDIDYVEI PVDWWDAEAD KSLLIGVFKH GYERYNAMRA DPALCFLEKV GMPDEKSLSA1320
 1321 EQGVTDGTSD IPERGNMDKE DNTEDKLDGL QKQMESSSDG GDGIFGEKKD DSRAAQDGSD1380
 1381 PDKSPWPVSS ALTARLRRLV TVYQRCNRKE LCRPEILGPG NQGYWVQEEM FRRTSEMDLI1440
 1441 NKEAQKRWTR REQADFYRAV SSFGVVYDQE KKTFDWTQFR IISRLDKKSD ESLEHYFYSF1500
 1501 VAMCRNVCRL PTWKDGGPPD PSIYVEPITE ERAARTLYRI ELLRKVREQV LRCPQLHERL1560
 1561 QLCRPSLYLP VWWECGKHDR DLLVGTAKHG LNRTDYYVMT DPQLSFLDAY RNYAQHKRTD1620
 1621 AQAPESLCCL YQTNSKLYES LTYSQMNRTS EPLENEPENL VKIEGRDDHP PPPGGNLSDM1680
 1681 SCENFLSKVQ DVISITHDES LLPESLESMM YGKKALSQEP GSFQESPSTI EPRKDALASS1740
 1741 ASEEGKCQPG GHEAEIPTGP SFMDSLEAGV AQMNIKNGKH LLLSLSREGE LCSETGQRPE1800
 1801 SIGQLEAKCL ASPSLDQGNE SGFVDMYNLS VCDSRRSLSS DQQLIDLLED KSLESKLALS1860
 1861 QTHSDEEEEE ENEEENVGVA TGLRERPEVL HLAEPTADTL REKSRSFHVE EAKRGGLEAM1920
 1921 NQNPGPQGAF PQAACQCHCK HADQWTRGLE NEGFEVEKPK GYHPDMYKSK TNSVTVEGEP1980
 1981 TATPAEPPQG KHELLKEPWK DSAEGKKGFH VYSEASELKS EDMDFESKDD FDRDGNGHAQ2040
 2041 DYPGKYSEEE SKSSTSGIAG DLGDDLQEAR APTIAQLLQE KTLFSFSEWP KDRVIINRLD2100
 2101 NICHVVLKGK WPSSQQYEPS GTLPTPVLTG SAGSRSSLSE PEASEHSFSS SAALVAQIQK2160
 2161 ESFLAPVFTK DEQKHRRPYE FEVERDAKAR SLEQFSATHG HPPIVLNGWH GESAIDLSCT2220
 2221 SEGSPGATSP FPVSASTPKI GAIGSLQGAL GMDLSGILQA GLIHPVTGQI VNGSLRRDDA2280
 2281 ATRRRRGRRK HVEGGMDLIF LKEQTLQAGI LEVHEDPGQA PPSASHPEGP VPAAPAPEPT2340
 2341 PAASSQAEKA IPSKSLLDWL RQQADYSLEV PGFGANFSDK PKQRRPRCKE PGKLDVNSLS2400
 2401 GEERVPAVPK EPGLRGFLPE NKFNHTLAEP VLRDGGPRRR GRRPRSELLK APAIVADSPS2460
 2461 GMGPLFMNGL IAGMDLVGLQ NMRNMPGIPL TGLVGFPAGF AAMPTGEEVK STLSMLPMML2520
 2521 PGMAAVPQMF GVGGLLNAPM AAACTSTAPA PLPSTTKSGT PATEKTVEDK PSSHDVKTDT2580
 2581 LAEDKPGPGP FSDQSEPAIT TSSPVAFNPF LIPGVSPGLI YPSMFLSPGM GMALPAMQQA2640
 2641 RHSEVIGLES QKRKKKKTKG DSLNPNPEPA PGSEKEPGSD QNCPESRAPV PPDREHAAQA2700
 2701 REGGLKDSNS DTN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle