YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|73992485
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.86
Transmembrane Helix	8	30	0.85
Cytoplasmic	31	40	0.82
Transmembrane Helix	41	61	0.92
Non-Cytoplasmic	62	101	0.94
Transmembrane Helix	102	120	0.93
Cytoplasmic	121	133	0.86
Transmembrane Helix	134	153	0.96
Non-Cytoplasmic	154	159	0.80
Transmembrane Helix	160	183	0.91
Cytoplasmic	184	201	0.94
Transmembrane Helix	202	225	0.92
Non-Cytoplasmic	226	239	0.85
Transmembrane Helix	240	259	0.93
Cytoplasmic	260	268	0.86
Transmembrane Helix	269	288	0.69
Non-Cytoplasmic	289	332	0.54
Transmembrane Helix	333	354	0.69
Cytoplasmic	355	405	0.63
Transmembrane Helix	406	428	0.88
Non-Cytoplasmic	429	443	0.62
Transmembrane Helix	444	468	0.83
Cytoplasmic	469	474	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIITPAFIA LRAAVPCLCS GASCLLCSCC PNSKNSTVTR LIYAFILFLG AALSCIMLTE  60
   61 GMETQLKKIP GFCEGGFKIN MADRKVDKDC DVLVGYKAVY RINFALAIFF FVFSLLMLKV 120
  121 KTSKDPRAAV HNGFWFFKIA AIVGIMVGSF YIPGGHFTTA WFIVGMVGAF LFILIQLVLL 180
  181 VDFAHSWNES WVSRMEEGNP RCWYAALLSV TSICYILSVV FVGLLYTYYT KPDGCTENKF 240
  241 FISINLILCF VVSIISIHPK IQEHQPRSGL LQSSLITLYT MYLTWSAMSN EPDRSCNPGL 300
  301 WTIVTHMTAP TLAPGNSTAI VPTSAPPSKG GHFIDLENFI GLTGFVLCLL YSSIRTSNNS 360
  361 QVSKLTLSGS DSVILRDTAA NGGSDEEDGQ PRRAVDNEKE GVQYSYFLFH FMLSLASLYI 420
  421 MMTLTSWYSP DAEFQSMTSK WPAVWVKISS SWVCLLLYVW TLVAPLVLTN RDFS