YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLSA_SODGM
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLYTVINW LLLFGYWLLI AGVTLRVMMK RRAVPSAMAW LLVIYILPLV GIITYLLFGE  60
   61 LNLGKRRAER SKALWPSTAK WIEDLKGCRR IFASENSEVA RALFQLCEHR QGMGGLKGNQ 120
  121 MQLLTSSDDA LRALVRDIGL AQKNIEIVFY IWQSGGLVDQ VAEALMAVAR RGVRCRLMLD 180
  181 SAGSVDFFRS PYPALMRAAG VHVVEALHVS LLRVFLRRMD LRQHRKMVLI DNYVAYTGSM 240
  241 NMVDPRFFKQ DAGVGQWIDI MARMEGPVAT AMGIIFSCDW EIETGERILP PLPDVNIMPF 300
  301 EQATGHTIQV IASGPGFPEG VIHQALLTSI YAAREQLVMT TPYLVPSDDL LQAICTAAQL 360
  361 GVEVHIIVPR HNDSMLVGWA SRAFFAELLE AGVLIHQFEG GLLHTKSVLV DGQLSLVGTV 420
  421 NLDMRSLWLN FEITLVIDDD DFGSDLARVQ EDYIARSRLI EPKVWSKRPY WQRIVERLFY 480
  481 FFSPLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.87
Transmembrane Helix	7	28	0.92
Cytoplasmic	29	36	0.84
Transmembrane Helix	37	59	0.91
Non-Cytoplasmic	60	486	0.86