YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74003496
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHTNLKKKF SCCVLAFLLF AVICVWKEKK KGSYYDSLKL QTKEFQMVRG LEKQAATLSS  60
   61 TQNPPRASQA LGSPRGPVKA KSEASFQVWN KDSSSKNLIP RLQKIWRNYL NMNKYKVSYK 120
  121 GPGPGVKFSA EALHCHLRDH VNVSMVEATD FPFNTSEWEG FLPKENIRTK AGPWGRCAVV 180
  181 SSAGSLKSSQ LGREIDDHDA VLRFNGAPTA SFQQDVGTKT TIRLMNSQLV TTEGRFLKDS 240
  241 LYNEGILIVW DPSVYHSDIP KWYQSPDYSF FENYKSYRKL HPDQPFYILK PQMPWELWDI 300
  301 IQEVSPEEIQ PNPPSSGMLG IIIMMTLCDQ VDIYEFLPSK RKTDVCYYYQ KFFDSACTMG 360
  361 AYHPLLFEKN LVKHLNQGTD EDIYLLGKAT LPGFRRIRC

Type	Start	End	Confidence
Signal Peptide	1	24	0.99
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	399	0.99