YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74004280
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREQHAESRN GVVAVLEDLE RELDEPRKQA TRPASGRAAA VTKKRCAVVG RVPPRPHLWV  60
   61 LLPAGPRGRS AARTAEVPAE PGARAEAGRV RGARHTAGAQ VSGRAATCRG DTGRGGRGGP 120
  121 LGARALRRAP ARTPSPGCPR ALAGLRLDPQ QFGDELHSHQ DARVQDSVTR PTRSSVDVAV 180
  181 LVPSNDRSLE AKPPPTRLTL PRGQPRPRFS GSRLQCLPRG VFELTRRTRR TSASPQQAPG 240
  241 STRQARVAGA FTGSWRIPRP RGSARTEVPS APQRFQTFRA ITEEKTHRGP EIPSKQPSCS 300
  301 SSPLQVARQE FQTSVVSWDI DTAAKFIGAG AATVGVAGSG AGIGTVFGSL IIGYARNPSL 360
  361 KQQLFSYAIL GFALSEAMGL FCLIVAFLIF FAM

Type	Start	End	Confidence
Non-Cytoplasmic	1	325	0.54
Transmembrane Helix	326	354	0.78
Cytoplasmic	355	366	0.44
Transmembrane Helix	367	391	0.91
Non-Cytoplasmic	392	393	0.46