YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74006439
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.98
Transmembrane Helix	67	88	0.92
Non-Cytoplasmic	89	156	0.95
Transmembrane Helix	157	178	0.89
Cytoplasmic	179	199	0.85
Transmembrane Helix	200	221	0.82
Non-Cytoplasmic	222	228	0.73
Transmembrane Helix	229	247	0.67
Cytoplasmic	248	256	0.64
Transmembrane Helix	257	280	0.87
Non-Cytoplasmic	281	333	0.72
Transmembrane Helix	334	352	0.93
Cytoplasmic	353	369	0.78
Transmembrane Helix	370	387	0.88
Non-Cytoplasmic	388	427	0.84
Transmembrane Helix	428	445	0.82
Cytoplasmic	446	450	0.55
Transmembrane Helix	451	475	0.65
Non-Cytoplasmic	476	495	0.65
Transmembrane Helix	496	521	0.67
Cytoplasmic	522	743	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNAGAMSGS GNLMDFLDEP FPDVGTYEDF HTIDWLREKS RDTDRHRKIT SKSKESIWEF  60
   61 IKSLLDAWSG WVVMLLIGLL AGTLAGVIDL AVDWMTDLKE GVCLSAFWYS HEQCCWTSNE 120
  121 TTFEDRDKCP LWQKWSELLV NQSEVGGASA YILNYLMYIL WALLFAFLAV SLVRVFAPYA 180
  181 CGSGIPEIKT ILSGFIIRGY LGKWTLLIKT VTLVLVVSSG LSLGKEGPLV HVACCCGNFF 240
  241 SSLFSKYSKN EGKRREVLSA AAAAGVSVAF GAPIGGVLFS LEEVSYYFPL KTLWRSFFAA 300
  301 LVAAFTLRSI NPFGNSRLVL FYVEYHTPWY MAELFPFILL GVFGGLWGTL FIRCNIAWCR 360
  361 RRKTTKLGKY PVLEVIVVTA ITAIIAYPNP YTRRSTSELI SELFNDCGAL ESSQLCDYIN 420
  421 DPNMTRPLAL ALIFKIVITI FTFGMKIPSG LFIPSMAVGA MAGRMVGIGV EQLAYHHHDW 480
  481 IVFRNWCRPG ADCVTPGLYA MVGAAACLGG VTRMTVSLVV IMFELTGGLE YIVPLMAAAV 540
  541 TSKWVADAFG KEGIYEAHIH LNGYPFLDVK DEFTHRTLAT DVMRPRRGEP PLSVLTQDSM 600
  601 TVEDVETLIK ETDYNGFPVV VSRDSERLIG FAQRRELILA IKNARQRQEG IVSNSIMYFT 660
  661 EEPPELPANS PHPLKLRRVL NLSPFTVTDH TPMETVVDIF RKLGLRQCLV TRSGRLLGII 720
  721 TKKDVLRHMA QMANQDPESI MFN