YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74006441
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.98
Transmembrane Helix	67	88	0.92
Non-Cytoplasmic	89	156	0.95
Transmembrane Helix	157	178	0.89
Cytoplasmic	179	199	0.85
Transmembrane Helix	200	221	0.82
Non-Cytoplasmic	222	228	0.73
Transmembrane Helix	229	247	0.66
Cytoplasmic	248	256	0.64
Transmembrane Helix	257	280	0.87
Non-Cytoplasmic	281	333	0.72
Transmembrane Helix	334	352	0.93
Cytoplasmic	353	369	0.78
Transmembrane Helix	370	387	0.93
Non-Cytoplasmic	388	441	0.92
Transmembrane Helix	442	464	0.83
Cytoplasmic	465	468	0.67
Transmembrane Helix	469	492	0.60
Non-Cytoplasmic	493	493	0.37
Transmembrane Helix	494	526	0.65
Cytoplasmic	527	740	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNAGAMSGS GNLMDFLDEP FPDVGTYEDF HTIDWLREKS RDTDRHRKIT SKSKESIWEF  60
   61 IKSLLDAWSG WVVMLLIGLL AGTLAGVIDL AVDWMTDLKE GVCLSAFWYS HEQCCWTSNE 120
  121 TTFEDRDKCP LWQKWSELLV NQSEVGGASA YILNYLMYIL WALLFAFLAV SLVRVFAPYA 180
  181 CGSGIPEIKT ILSGFIIRGY LGKWTLLIKT VTLVLVVSSG LSLGKEGPLV HVACCCGNFF 240
  241 SSLFSKYSKN EGKRREVLSA AAAAGVSVAF GAPIGGVLFS LEEVSYYFPL KTLWRSFFAA 300
  301 LVAAFTLRSI NPFGNSRLVL FYVEYHTPWY MAELFPFILL GVFGGLWGTL FIRCNIAWCR 360
  361 RRKTTKLGKY PVLEVIVVTA ITAIIAYPNP YTRRSTSELI SELFNDCGAL ESSQLCDYIN 420
  421 DPNMTRPVDD IPDRPAGVGV YTAMWQLALA LIFKIVITIF TFGMKIPSGL FIPSMAVGAM 480
  481 AGRMVGIADC VTPGLYAMVG AAACLGGVTR MTVSLVVIMF ELTGGLEYIV PLMAAAVTSK 540
  541 WVADAFGKEG IYEAHIHLNG YPFLDVKDEF THRTLATDVM RPRRGEPPLS VLTQDSMTVE 600
  601 DVETLIKETD YNGFPVVVSR DSERLIGFAQ RRELILAIKN ARQRQEGIVS NSIMYFTEEP 660
  661 PELPANSPHP LKLRRVLNLS PFTVTDHTPM ETVVDIFRKL GLRQCLVTRS GRLLGIITKK 720
  721 DVLRHMAQMA NQDPESIMFN