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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|74008320
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQTDCKPYQ PLSKVKHEMD LAYTSSSDES EDGHKPRQSY NSRETLHEYN QELRMNYNSQ  60
   61 SRKRKEVEKS TQEMEFCETP HTLCSGYQTD MHSVSRHGYQ LEMGSDVDTE TEGAASPDHA 120
  121 LRMWIRGMKS EHSSCLSSRA NSALSLTDTD HERKSDGEND MPSSPHNQFT FRPLPPPPPP 180
  181 PHACTCARKP APAADSLQRR SMTTRSQPSP AAPAPPTSTQ DSVHLHNSWV LNSNIPLETR 240
  241 HFLFKHGSGS SAIFSAASQN YPLTSNTVYS PPPRPLPRST FSRPAFTFNK PYRCCNWKCT 300
  301 ALSATAITVT LALLLAYVIA VHLFGLTWQL QPVEGQLYEN GVSKGNRGTE SMDTTYSPIG 360
  361 GKVSDKSEKK VFQKGRAIDT GEVDIGAQVM QTIPPGLFWR FQITIHHPIY LKFNISLAKD 420
  421 SLLGIYGRRN IPPTHTQFDF VKLMDGKQLV KQDSKGSDDT QHSPRNLILT SLQETGFIEY 480
  481 MDQGPWYLAF YNDGKKMEQV FVLTTAIEIM DDCSTNCNGN GECISGHCHC FPGFLGPDCA 540
  541 RDSCPVLCGG NGEYEKGHCV CRNGWKGPEC DVPEEQCIDP TCFGHGTCIM GVCICVPGYK 600
  601 GEICEEEDCL DPMCSNHGIC VKGECHCSTG WGGVNCETPL PICQEQCSGH GTFLLDAGVC 660
  661 SCDPKWTGSD CSTELCTMEC GSHGVCSRGI CQCEEGWVGP TCEERSCHSH CAEHGQCKDG 720
  721 KCECSPGWEG DHCTIDGCPG LCFGNGRCTL DQNGWHCVCQ VGWSGIGCNV VMEMLCGDNL 780
  781 DNDGDGLTDC VDPDCCQQSN CYVSPLCQGS PDPLDLIQQS QPLFSQHTSR LFYDRIKFLI 840
  841 GKDSTHVIPP EISFDSRRAC VIRGQVVAVD GTPLVGVNVS FLHHSDYGFT ISRQDGSFDL 900
  901 VAIGGISVIL IFDRSPFLSE KRTLWLPWNQ FIVVEKVTMQ RVVSDPPSCD ISNFISPNPI 960
  961 VLPSPLTSFG GSCPERGTIV PELQVVQEEI PIPSSFVRLS YLSSRTPGYK TLLRILLTHS1020
 1021 TIPMGMIKVH LTVAVEGRLT QKWFPAAVNL IYTFAWNKTD IYGQKVWGLA EALVSVGYEY1080
 1081 ETCPDFILWE KRTVILQGFE MDASNLGGWS LNKHHILNPQ SGIIHKGNGE NMFISQQPPV1140
 1141 ISTIMGNGHQ RSVACTNCNG PAHNNKLFAP VALASGPDGS VYVGDFNFVR RIFPSGNSVS1200
 1201 ILELRNRDTR HSTSPAHKYY LAMDPVSESL YLSDTNTRKV YRLKSLVETK DLSKNFEVVA1260
 1261 GTGDQCLPFD QSHCGDGGRA SEASLNSPRG ITVDRHGFIY FVDGTMIRRI DEKAVITTVI1320
 1321 GSNGLTSTQP LSCDSGMDIT QVRLEWPTDL AVNPMDNSLY VLDNNIVLQI SENRRVRIIA1380
 1381 GRPIHCQVPG IDHFLVSKVA IHSTLESARA ISISHSGLLF IAETDERKVN RIQQVTTNGE1440
 1441 ISIIAGAPTD CDCKIDPNCD CFSGDGGYAK DAKMKAPSSL AVSPDGTLYV ADLGNVRIRT1500
 1501 ISRNQAHLND MNLYEIASPA DQELYQFTVN GTHLHTLNLI TRDYVYNFTY NAEGDLGAVT1560
 1561 SSNGNSVHIR RDAGGMPLWL VVPGGQVYWL TISSNGVLKR VSAQGYNLAL MTYPGNTGLL1620
 1621 ATKSNENGWT TVYEYDPEGH LTNATFPTGE VSSFHSDLEK LTKVELDTSN RENVLMSTNL1680
 1681 TATSTIYILK QENTQSTYRV SPDGSLRVTF ASGMEISLSS EPHILAGAVN PTLGKCNISL1740
 1741 PGEHNANLIE WRQRKEQNRG NVSAFERRLR AHNRNLLSID FDHITRTGKI YDDHRKFTLR1800
 1801 ILYDQTGRPI LWSPVSRYNE VNITYSPSGL VTFIQRGTWN EKMEYDQSGK IISRTWADGK1860
 1861 IWSYTYLEKS VMLLLHSQRR YIFEYDQSDC LLSVTMPSMV RHSLQTMLSV GYYRNIYTPP1920
 1921 DSSTSFIQDY SRDGRLLQTL HLGTGRRVLY KYTKQARLSE ILYDTTQVTL TYEESSGVIK1980
 1981 TIHLMYDGFI CTIRYRQTGP LIGRQIFRFS EEGLVNARFD YSYNNFRVTS MQAVINETPL2040
 2041 PIDLYRYVDV SGRTEQFGKF SVINYDLNQV ITTTVMKHTK IFSANGQVIE VQYEILKAIA2100
 2101 YWMTIQYDNM GRMVICDIRV GVDANITRYF YEYDADGQLQ TVSVNDKTQW RYSYDLNGNI2160
 2161 NLLSHGNSAR LTPLRYDLRD RITRLGEIQY KMDEDGFLRQ RGNDIFEYNS NGLLQKAYNK2220
 2221 ASGWTVQYYY DGLGRRVASK SSLGQHLQFF YADLANPIRV THLYNHTSSE ITSLYYDLQG2280
 2281 HLIAMELSSG EEYYVACDNT GTPLAVFSSR GQVIKEILYT PYGDIYHDTY PDFQVIIGFH2340
 2341 GGLYDLLTKL VHLGQRDYDV VAGRWTTPNH HIWKQLNLLP KPFNLYSFEN NYPVGKIQDV2400
 2401 AKYTTDIGSW LELFGFQLHN VLPGFPKPEL ENLELTYELL QLQTKTQEWD PGKTILGIQC2460
 2461 ELQKQLRNFI SLDQLPMTPR YNDGRCLEGG KQPRFAAVPS VFGKGIKFAI KDGIVTADII2520
 2521 GVANEDSRRL AAILNNAHYL ENLHFTIEGR DTHYFIKLGS LEEDLVLIGN TGGRRILENG2580
 2581 VNVTVSQMTS VLNGRTRRFA DIQLQHGALC FNIRYGTTVE EEKNHVLEIA RQRAVAQAWT2640
 2641 KEQRRLQEGE EGIRAWTEGE KQQLLSTGRV QGYDGYFVLS VEQYLELSDS ANNIHFMRQS2700
 2701 EIGRR

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