YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74011407
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMKWISVLL LLQLSCYFSS GSCGKVLVWP TEYSHWINVK TILDELVQRG HEVTVLTSSV  60
   61 SILVDPNKLS AIKFEIYSAH LSRGDFEALF IKLLNILIYD MPKDSFWTYF SLMQEFFWEF 120
  121 YECAQKLCKD VVLNKKLMTK LQESKFDVIL ADAVGPCGEL LAELLKIPLV YSLRFSPGYA 180
  181 FEKHSGGLPL PPSYVPVILS ELTDQMTFME RVKNMLYVLY FDFWFQTINE KSWDQFYSEV 240
  241 LGKPTTLYEL MRKADIWLIR TYWDFEYPRP LLPHFDFVGG LHCKPAKSLP TQIFSSQEME 300
  301 EFVQSSGENG IVVFSLGSMI NNMPEERANV IASALAQIPQ KVLWRFDGKK PDNLGRNTRL 360
  361 YKWIPQNDLL GHPKTKAFIT HGGTNGIYEA IYHGIPMVGI PLFADQADNI VHMKAKGAAI 420
  421 RLDLSTMSSA DLLDALRTVI NDPSYKENAM KLSGIHHDQP IKPLDRAVFW IEYVMRHQGA 480
  481 KHLRPASHDL TWFQYHSLDV IGFLLACVAT AIFVTTQCCL FCCRKVAKTG KKIKKE

Type	Start	End	Confidence
Signal Peptide	1	23	0.96
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	499	0.99
Transmembrane Helix	500	523	0.87
Cytoplasmic	524	536	0.91