YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71735142, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.14
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDMAKNLIL WLIIAAVLVT VMNNFSSPNE PQNLNYSEFI QQVKDGKVEK VSVDGYVITG  60
   61 KRSDGDTFKT IRPNIPDNGL IGDLVSNNVV IEGKQPEQQS IWTQLLVASF PILVIIAVFM 120
  121 FFMRQMQGGA GGKGGPMSFG KSKARLLSED QVKTTLADVA GCDEAKEEVG ELVEFLRDPG 180
  181 KFQRLGGRIP RGVLMVGPPG TGKTLIAKAI AGEAKVPFFT ISGSDFVEMF VGVGASRVRD 240
  241 MFEQAKKHAP CIIFIDEIDA VGRHRGAGMG GGHDEREQTL NQLLVEMDGF EMNDGIIVIA 300
  301 ATNRPDVLDP ALLRPGRFDR QVVVGLPDIR GREQILKVHM RKVPMGEDVN AGVIARGTPG 360
  361 FSGADLANLV NEASLFAARS GKRVVEMKEF ELAKDKIMMG AERKSMVMSE KEKRNTAYHE 420
  421 AGHAIVGRLV PEHDPVYKVS IIPRGRALGV TMFLPEEDRY SLSKRALISQ ICSLYGGRIA 480
  481 EEMTLGFDGV TTGASNDIMR ASQIARNMVT KWGLSEKLGP LMYSEEEDAG YLGRGSSQNS 540
  541 SVSGDTAKLI DSEVRSIIDH CYGTAKQLLT DNRDKLEAMA DALMKYETID ADQIDDIMTG 600
  601 RVPREPRDWG GGSGTNGTPI TPDPRPETPI GGPAAEH

Type	Start	End	Confidence
Cytoplasmic	1	7	0.72
Transmembrane Helix	8	27	0.83
Non-Cytoplasmic	28	100	0.80
Transmembrane Helix	101	123	0.82
Cytoplasmic	124	217	0.66
Transmembrane Helix	218	232	0.14
Non-Cytoplasmic	233	637	0.54