YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|77993302, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.98
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPARGGCCLL EVCVWVLLLV CKTGSGCPAL CTCSGTTVDC HGLGLKNIPR NIPRNTERLE  60
   61 LNGNNLTRIN RNDFTGLKYL RVLQLMENQI VTVERGAFDE MRELERLRLN RNQLHQLPEL 120
  121 LFQKNAALSR LDLSENFIQA IPRKAFRGAT DIKNLQLDKN HISCIEDGAF RAMRGLEVLT 180
  181 LNNNNISSIP VSSFNHMPKL RTFRLHSNNL VCDCVLSWLS QWLRERPNIG LFTQCSSPAP 240
  241 LRGLNVAEVQ KHEFSCSGQS DSAVGQSCSL SSGSCPAVCS CNNNIVDCRG KGPTLIPSSL 300
  301 PDSMTEIRLE QNSIKSIPPG AFSPYKKLRR IDLSNNQISE LAPDAFQGLR SLNSLVLYGN 360
  361 KITDLPRGVF DGLHALQLLL LNANKIHCLR ANTFQDLQNL SLLSLYDNKI QTLAKGTFSS 420
  421 LRAIQTLHLA QNPFICDCNL KWLADYLRSN PIETSGARCT SPRRLANKRI GQIKSKKFRC 480
  481 SAKEQYAIPG TEDSRLNNDC NNDPVCPAKC RCESNVVDCS NLRLDRIPEH VPASTTEPRL 540
  541 NNNEITTIEA MGAFKTLTHL KKINLSNNKI SEIEDGAFEG ASSVNELHLT ANQLDLAHSG 600
  601 MFRGLEGLRM LMLRNNRISC IHNNSFTGLH NVRLLSLYDN TLTTIAPGAF DTLQSLSTLN 660
  661 LLANPFNCNC RLAWLSSWLR NRKIVTGNPR CHRPAFLKEI PLQDVAAPDF RCEDDHEDVS 720
  721 CAPPVHCPAD CTCLESVVRC SNKHLQALPK GTPRNITELY LDGNQLSTVP KELSSFKSLQ 780
  781 LVDLSNNRIS SLTNSSFTNM SQLTTLILSY NALRCIPTLA FSGLRSLRLL SLHGNDISEL 840
  841 PDGIFSDAQS LSHLAIGANP LHCDCGLRWL SDWVKTGYKE PGIARCASPH GMEGKLLLTT 900
  901 PAKRFECQGE VDSAILAKCN PCASGPCLHQ GVCEADQTDS YRCRCADGFK GKNCETVVNA 960
  961 CVSEPCKNGG TCHVSTDEDE GYSCSCAAGF EGPSCEVDTD ECRDNDCQNG ATCIDGINNY1020
 1021 TCLCAPFYTG EMCEDLEDMC SSARSPCKQQ STCFITVTGP KCICAAGYVG EDCSVNYDDC1080
 1081 KDHRCQNGAQ CVDELNGYSC VCQKGYSGQL CEVAPPPRSP CERADCQNNA PCVERAGHPL1140
 1141 CQCLEGFGGP RCEKLVSVNF VDRDSYLLLS DLKNWPQANI TLQVSTAEDN GILLYNGDND1200
 1201 HIAVEIHEGH VKVSYDPGSQ QSHAIYSTET VNDGQFHTVE LVTFDQMVNL SIDGGSPTTM1260
 1261 DSFGKVQPLR GEAPLYVGGM PVSVHPTAPR VWQIQNSSSF HGCIQNLYIN NELQDFTKTQ1320
 1321 MKPGVVPGCE PCRKIYCLHG ICQPNTATGP VCHCQPGWSG QHCDQPLANP CMGSKCVHGR1380
 1381 CIPMDMQSYR CECQEGFHGA LCNQHEELFN PCRKLQCKHG HCQISDTGDA YCHCEPGYSG1440
 1441 DLCDRESECR GEPVRDFYQV QRGYSICQTT RMVSWVECSG VCESGSCCAS QRMKRRKYSF1500
 1501 ECSDGMSFSE EVEKTIKCGC VGCM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle