YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75908039, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMESRGSKR ENKPPVPNPQ YPIPITPYPQ YPTPNTSMPW SRIISGIVAI ALALVAVLLG  60
   61 GWYFTIMLAI VVFLGQQEYF DLVRTRGILP AAKTTLFLSQ VLLVTCTVDS NLVDAVMPIA 120
  121 GTFICFYLLF QPKMATIADV SASIMGLFYV GYLPSYWVRL RSIGTTAISN LPLGGYWPGS 180
  181 LTDILEERNF ASLPQGLKIT VLTFLCIWAA DIGAYTIGKF FGKTRLSDIS PKKTVEGAVF 240
  241 GISASLAVAL AGAYYLHLPK FLLTGTILGL LIGLASLLGD LTESMLKRDA GVKDSGQLIP 300
  301 GHGGILDRTD SYIFTAPLVY YFVTLILPLL SQ

Type	Start	End	Confidence
Cytoplasmic	1	42	0.85
Transmembrane Helix	43	66	0.88
Non-Cytoplasmic	67	111	0.69
Transmembrane Helix	112	130	0.71
Cytoplasmic	131	134	0.54
Transmembrane Helix	135	158	0.73
Non-Cytoplasmic	159	198	0.69
Transmembrane Helix	199	218	0.92
Cytoplasmic	219	234	0.84
Transmembrane Helix	235	256	0.89
Non-Cytoplasmic	257	260	0.79
Transmembrane Helix	261	281	0.88
Cytoplasmic	282	311	0.88
Transmembrane Helix	312	330	0.61
Non-Cytoplasmic	331	332	0.48