YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75704531, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKVIINIV SSLKAMQNQV HDESQPLNPK NQNHAPWKKA AASLSLVLLG SGMTLAGGYL  60
   61 AGNQQQLAQK ASDLAVSRVD AAPPLGNNTD PNFVTQVVQK VGPAVVRIEA SRTVTSRLPA 120
  121 EFNDPFFRRF FGSQLPQQQE RVQRGTGSGF LISADGSILT NAHVVDGADT VRVILKDGRS 180
  181 FQGKVLGTDN LTDVAVVKIQ ANNLPTLAVG NSDQLQPGQW AIAIGNPLGL DNTVTTGIIS 240
  241 ATGRTSNQIG APDKRVEYIQ TDAAINPGNS GGPLLNYRGE VIGMNTAIIQ GAQGLGFAIP 300
  301 IKTAQRISNQ LIATGKVQHP YLGIQMVGLT PQVRQNINSD PNSGLSVDTD KGVLVVRVMP 360
  361 NSPAARAGLR AGDVIQKLNG QSVTDASNVQ RAVENAQVGG QLQLELWRNG RNVNLAVQAG 420
  421 AFPTQQVE

Type	Start	End	Confidence
Cytoplasmic	1	39	0.88
Transmembrane Helix	40	62	0.81
Non-Cytoplasmic	63	428	0.99