YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74315943, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDALNKLKQF DAYPKTLEDF RIKTCGGATV TIISGLIMLI LFFSELQYYL TKEVHPELFV  60
   61 DTSRGDKLRI NIDVIFPHMP CAYLSIDAMD VAGEQQLDVE HNLFKQRLDK DGQPVTTEAE 120
  121 KHDLGKEEEG VFDPSTLDPD RCESCYGAET DDLKCCNTCD DVREAYRRRG WAFKTPDTIE 180
  181 QCKREGFSQK MQEQKNEGCQ VYGFLEVNKV AGNFHFAPGK SFQQSHVHVH AVEIHDLQSF 240
  241 GLDNINMTHF IKHLSFGKDY PGIVNPLDDT NVAAPQASMM YQYFVKIVPT IYVKGDGEVV 300
  301 KTNQFSVTRH EKIANGLIGD QGLPGVFVLY ELSPMMVKFT EKQRSFTHFL TGVCAIIGGV 360
  361 FTVAGLIDSL IYHSARAIQK KIELGKAS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	43	0.84
Non-Cytoplasmic	44	348	0.95
Transmembrane Helix	349	372	0.90
Cytoplasmic	373	388	0.90