YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119603814, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLQWAAVAT FLYAEIGLIL IFCLPFIPPQ RWQKIFSFNV WGKIATFWNK AFLTIIILLI  60
   61 VLFLDAVREV RKYSSVHTIE KSSTSRPDAY EHTQMKLFRS QRNLYISGFS LFFWLVLRRL 120
  121 VTLITQLAKE LSNKGVLKTQ AENTNKAAKK FMEENEKLKR ILKSHGKDEE CVLEAENKKL 180
  181 VEDQEKLKTE LRKTSDALSK AQNDVMEMKM QSERLSKEYD QLLKEHSELQ HSSFGEFLSK 240
  241 RSHKNGSIGK QTGSRKGSFR KRQQEKTVNF IKDTCNILCQ NDNFVMLASR KFKFRKMHYD 300
  301 RFVIFLMPHI GCIVMALSKY LMMFQIYCKV CIPALKKNIS MLNTIFTY

Type	Start	End	Confidence
Cytoplasmic	1	6	0.51
Transmembrane Helix	7	28	0.91
Non-Cytoplasmic	29	45	0.48
Transmembrane Helix	46	67	0.90
Cytoplasmic	68	298	0.70
Transmembrane Helix	299	317	0.78
Non-Cytoplasmic	318	348	0.83