YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71143478
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKVKAFADW LTKWFTVIVI VWAVFNYFVP AASLWGKAYT GYMLGIVLFG MGLTLTLDDF  60
   61 KRILTQPLMV IVGTIAHFII MPLIAVALCA IFHLSGPLAV GVILVGCCPS GTSSNVMSYL 120
  121 SRGDVALDVS IGILSTLCAP FMIPLLMQLL ASQYVSVPVE SLFLNAVKVV LFPIALGVIC 180
  181 HMIFGKKIEK ITVALPIVSQ VAILLIIGVV VAANGPKLFV ASSLMAIPVV ILHNLCGYSL 240
  241 GFGFSKLMYK IYPKGFRYAQ QKAITFEVGM QDSALGETLA LTSFASNPIA AVPSTFFSVW 300
  301 HNISGSILSS WWRNHDDKHE IHWDSDNGEK GSAKNVATGD HPFDADKKAT ADAKVEG

Type	Start	End	Confidence
Cytoplasmic	1	9	0.98
Transmembrane Helix	10	31	0.91
Non-Cytoplasmic	32	37	0.83
Transmembrane Helix	38	57	0.95
Cytoplasmic	58	67	0.83
Transmembrane Helix	68	91	0.89
Non-Cytoplasmic	92	97	0.64
Transmembrane Helix	98	119	0.88
Cytoplasmic	120	128	0.76
Transmembrane Helix	129	151	0.86
Non-Cytoplasmic	152	163	0.85
Transmembrane Helix	164	184	0.94
Cytoplasmic	185	191	0.88
Transmembrane Helix	192	213	0.92
Non-Cytoplasmic	214	223	0.69
Transmembrane Helix	224	244	0.87
Cytoplasmic	245	357	0.72