YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76811648, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	220	0.97
Transmembrane Helix	221	241	0.91
Non-Cytoplasmic	242	248	0.88
Transmembrane Helix	249	271	0.94
Cytoplasmic	272	280	0.87
Transmembrane Helix	281	302	0.93
Non-Cytoplasmic	303	309	0.72
Transmembrane Helix	310	329	0.93
Cytoplasmic	330	336	0.85
Transmembrane Helix	337	357	0.90
Non-Cytoplasmic	358	364	0.77
Transmembrane Helix	365	386	0.88
Cytoplasmic	387	395	0.83
Transmembrane Helix	396	415	0.95
Non-Cytoplasmic	416	424	0.76
Transmembrane Helix	425	444	0.95
Cytoplasmic	445	452	0.76
Transmembrane Helix	453	474	0.89
Non-Cytoplasmic	475	481	0.76
Transmembrane Helix	482	503	0.90
Cytoplasmic	504	512	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRGAPRASI LFARERRQAP RDGRRLDDRG ARFRTLGHFR EYSVELFDRV QIEPADEAIV  60
   61 ARHLVAFDEL RNPPQQLLDE MQLAGQRLHA HDRLQRVAER ARIELDREAR DHALRFEPAQ 120
  121 PVGRARRGQP DAPREFADGL ARVVGERAQQ LAVDRIERVR RGKRRGKAFL HGDLLFKGGK 180
  181 AFCAEFSDGD VRIKSLESKP GFLLARTHMA SNPASSDARR GALEMVVAML MSGTIGWLVV 240
  241 SSRQHLMNVV FFRCLFGGAT MLIICAALGL LRRDLLTKRT IAFALLGSVA IVANWVLLFA 300
  301 AYSRASISMA TAVYNTQPFM LVALGALVFR ERLTASAAAW LVLAFGGLAL VVRVEPAVLA 360
  361 VPGEYLEGVA LALGAAFLYA VSSIVTKRLK GTPPHLIALF QTGVGVLALA PFVHYDALPA 420
  421 TAGQWLDLVA LGVVNTGIMY VLLYGAIQKL PTATIGALSF VYPVVAIVVD RFAFGQTLAW 480
  481 SQVGGAALIL LAAAGVNLGW RIVPARRVAA RG