YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76611283
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.90
Transmembrane Helix	11	33	0.75
Non-Cytoplasmic	34	84	0.73
Transmembrane Helix	85	106	0.80
Cytoplasmic	107	113	0.57
Transmembrane Helix	114	135	0.89
Non-Cytoplasmic	136	150	0.65
Transmembrane Helix	151	178	0.72
Cytoplasmic	179	189	0.52
Transmembrane Helix	190	216	0.69
Non-Cytoplasmic	217	233	0.37
Transmembrane Helix	234	260	0.80
Cytoplasmic	261	326	0.45
Transmembrane Helix	327	347	0.90
Non-Cytoplasmic	348	380	0.82
Transmembrane Helix	381	402	0.88
Cytoplasmic	403	464	0.86
Transmembrane Helix	465	487	0.80
Non-Cytoplasmic	488	493	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPLDPSRKE VLGFAVSCRV LTLVLQAVFN AIIPDHRAEA FSPPRLAPSG SADQLVEGLL  60
   61 GGLSHWDAEH FLFIAEHGYL YEHNFAFFPG FPLVLLLGAE LLRPLWGLLN LRSCLLISVA 120
  121 LLNSLFSALA ALALHDLGCL VLRCPRQASY GALLFCLSPA NVFLTAGYSE ALFALLTFSA 180
  181 MGQLERGHSW TSGLLFAMAT GVRSNGLVNI GFLIHSQCQG FFSSLMVHNA LRQLLKLMGS 240
  241 VFLSVFTLGL PFALFQYYAY TQFCLPGSAH PIPQPLLQLA VDQGYRTAEG NKPPWCSWGL 300
  301 PLIYSYIQDV YWNVGFLRYF ELKQVPNFLL AAPMAILVAW ATWTYVTTHP WLFLTLGMQR 360
  361 SKNKKTLEKP EPGFLSPRVF VYLVHAAALL LFGSLCMHVQ VLTRFLCSST PIVYWFSAHL 420
  421 LLDQEPLLKS LEAVPGKPPA GDPPPGQKGP RNSIMGLLYN WKTCSLVTRC VLGYFVTYWL 480
  481 LGLLLHCNWL PWT