YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76615162
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.97
Transmembrane Helix	83	105	0.80
Non-Cytoplasmic	106	110	0.51
Transmembrane Helix	111	131	0.81
Cytoplasmic	132	137	0.65
Transmembrane Helix	138	157	0.76
Non-Cytoplasmic	158	185	0.51
Transmembrane Helix	186	211	0.80
Cytoplasmic	212	213	0.38
Transmembrane Helix	214	234	0.70
Non-Cytoplasmic	235	268	0.58
Transmembrane Helix	269	285	0.87
Cytoplasmic	286	344	0.52
Transmembrane Helix	345	373	0.74
Non-Cytoplasmic	374	384	0.55
Transmembrane Helix	385	408	0.88
Cytoplasmic	409	421	0.51
Transmembrane Helix	422	444	0.88
Non-Cytoplasmic	445	450	0.46
Transmembrane Helix	451	468	0.55
Cytoplasmic	469	481	0.80
Transmembrane Helix	482	513	0.83
Non-Cytoplasmic	514	886	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPGDRLEP PPLPEYSCSY VVSRPVYNEL AFQQQYEQRP KERKTLRENL AQGCSCSRKR  60
   61 TLRMVKTLLP ILDWLPKYRI KEWLLSDIIS GVSTGLVGTL QGMAYALLAA VPVGYGLYSA 120
  121 FFPILTYFIF GTSRHISVGP FPVVSLMVGS VVLSMAPDEH FLVSSSNGTA LNTTIIDFAA 180
  181 RDAARVLIAS TLTLLVGIIQ LIFGGLQIGF IVRYLADPLV GGFTTAAAFQ VLVSQLKIVL 240
  241 NVSTKNYNGI LSIIYTLIEI FQNISNTNLA DFIAGLLTII ICMAVKELND RFKHKIPVPI 300
  301 PIEVIVTIAA TAISYGVDLE KKYNAGIVKS IPSGFLPPAM PSVSLFSEML TASFSISVVA 360
  361 YAIAVSVGKV YAIRHDYTID GNQEFIAFGI SNIFSGLFSC FVATTALSRT AVQESTGGKT 420
  421 QVRVAGIISA GVVMIAIVAL GKLLEPLQKS VLAAVVIANL KGMFMQVCDV PHLWRQNKTD 480
  481 AVIWVFTCMA SIILGLDLGL LAGLVFGFLT VVLRVQFPSW NSLGSIPSTD IYKSTKNYKN 540
  541 IEELEGVKIL RFSSPIFYGN VDGLKKCIKS TVGFDAIRVY NKRLKALRKI QKLIKKGQLR 600
  601 ATKNGIISGA GSSNNAFEPD EDIENPEEPD IPTKEIEIQV DWNSELPVKV NVPKVPIHSL 660
  661 VLDCGAVSFL DVVGVRSLRV IVKEFQRIDV NVYFASLQDH VIEKLEKCGF FNDNNIRKDI 720
  721 FFMTVHDAVL HLQNQVKSQE VQDSILETIT LIQDCKDPLE LMEAEMIEEQ LDVQDEDGGA 780
  781 LGHTGGACEN HPLDVKEGYK SLTNQYYKLA EAFQYGEQSS QPDPFQVNSL LSSTIHGLND 840
  841 KVDGDDNKSG RVEDGQFGST GSSRISSLKR LRSAQLVEVV ARRDLP