YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76620189
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRWCPDPAS LAGLRARRAC ALTLRNADPE LPRRKNRFGG RRQDLFSKSV ATTTARAFYP  60
   61 ARHTKAFPSW AANPCLVPGG QHLEHGRGIP PGRDESPSGC SSRDTPGAGV VTVGSAGHRG 120
  121 SELGDWILGR RGRVAGTPAF RGDHWRYKYP SASAEIRSGG LPLSRSPPLP LSLPRGYVHP 180
  181 VRRGGQRQRH AAAQGLRSPE PTLQDALRTP AAGSMSLSFL LLLFLSHLIL SAWAQGEKRL 240
  241 APKGQPGPAA TERNPGGASS RRSSSSTATS SSSPASSSSA ASRGGPGSSL EQSSFQWSPS 300
  301 GRRTGSLYCR VGIGFHLQIY PDGKVNGSHE ANMLSILEIF AVSQGIVGIR GVFSNKFLAM 360
  361 SKKGKLHASA KFTDDCKFRE RFQENSYNTY ASAIHRTEKT GREWYVALNK RGKAKRGCSP 420
  421 RVKPQHVSTH FLPRFKQLEQ PELSFTVTVP EKKKPPNPVK PKVPLSAPRR SPNTVKYRLK 480
  481 FRFG

Type	Start	End	Confidence
Non-Cytoplasmic	1	210	0.68
Transmembrane Helix	211	233	0.73
Cytoplasmic	234	484	0.52