YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FITM1_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERGPVVGAG RGAGARIRAL LGGLVRVLLW VASALLYFGS EQAARLLGSP CLRRLYHAWL  60
   61 AAVVIFGPLL QFHVNPRTIF ASHGNFFNIK FVNSAWGWTC TFLGGFVLLV VFLATRRVAV 120
  121 TARHLSRLVV GAAVWRGAGR AFLLIEDLTG SCFEPLPQGL LLHELPDRRS CLAAGHQWRG 180
  181 YTVSSHTFLL TFCCLLMAEE AAVFAKYLAH GLPAGAPLRL VFLLNVLLLG LWNFLLLCTV 240
  241 IYFHQYTHKV VGAAVGTFAW YLTYGSWYHQ PWSPGSPGHG LFPRPHSIHK HN

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.85
Transmembrane Helix	17	39	0.86
Cytoplasmic	40	54	0.88
Transmembrane Helix	55	74	0.94
Non-Cytoplasmic	75	94	0.89
Transmembrane Helix	95	115	0.96
Cytoplasmic	116	185	0.71
Transmembrane Helix	186	208	0.80
Non-Cytoplasmic	209	219	0.57
Transmembrane Helix	220	243	0.86
Cytoplasmic	244	249	0.51
Transmembrane Helix	250	268	0.86
Non-Cytoplasmic	269	292	0.69