YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76630354
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.65
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRGSFLLLA LLALLVLTSA VAKKKDKVKK GGPGSECAEW TWGPCTPSSK DCGVGFREGT  60
   61 CGAQTQRIRC RVPCNWKKEF GADCKYKFEI WGACDGGTGT KACQGTLKKA RYNAQCQETI 120
  121 RVTKSCSPKT KAKAKAKKGK EKDYRPGPDA KAPWLHSEAR PTPSLHRLKM LPTSAFCLLV 180
  181 SFIIMPCFFP FTCPHHPKCP KYTSEHNIFV SNLELEYLDA Y

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	169	0.99
Transmembrane Helix	170	192	0.59
Cytoplasmic	193	221	0.64