YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76630593
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPASCSQVWP CSREPRGPCP ESYRSALQVG ERGLFLPQTS QIGLNTGSQA SRNESKGSTQ  60
   61 PQTHLLLARI GLTSALPKAT TILRPPTRKI QATHQLRTPP KPLRSGPGTP ELRSGALVPK 120
  121 QQVGRVNEAP VSLIWGQWTL SFSHRSGLQT ALALTVSNLG IIDYMGYEAA AWTGSLLCPE 180
  181 TMSVGLLWLG FTLLGALHTQ ARSSSSRLLR APPLSRIPLQ PNFQADQFQG KWYTVGVAGN 240
  241 AIKKEEQDPL KMYSSNYELK EDGSYNVTSI LLKDDLCDYW IRTFVPSSQP GQFTLGNIKS 300
  301 YRGIRSYTVR VVNTDYNQFA IVYFKKVQRK KTYFKITLYG RTKELTPEVR ENFINFAKSL 360
  361 GLTDDHIVFT VPIDRCIDDQ

Type	Start	End	Confidence
Cytoplasmic	1	146	0.76
Transmembrane Helix	147	167	0.66
Non-Cytoplasmic	168	180	0.56
Transmembrane Helix	181	201	0.78
Cytoplasmic	202	380	0.66