YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PX11A_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAFIRFTNQ TQGRDRLFRA TQYTCMLLRY LLEPKADNEK VVMKLKKLES SVSTGRKWFR  60
   61 LGNVVHALQA TQQSVRATDL VPRICLTLAS LNRVIYFICD TVLFVRSTGL ASGVNKEKWR 120
  121 RWAARYYYYS LLLSLVRDLY EVSLQMKQVA HDRAKREKSP SQDTLGYSVA DEETEWLQSL 180
  181 LLLLFHSLKR HPPLFLDTVK NFCDILNPLD QLGIYKSNPG IIGLGGLVSS VAGIITVAYP 240
  241 QMKLKTQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	219	0.68
Transmembrane Helix	220	240	0.79
Cytoplasmic	241	247	0.54