YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76648137, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	61	0.57
Transmembrane Helix	62	88	0.76
Non-Cytoplasmic	89	129	0.52
Transmembrane Helix	130	153	0.87
Cytoplasmic	154	164	0.45
Transmembrane Helix	165	184	0.88
Non-Cytoplasmic	185	191	0.47
Transmembrane Helix	192	213	0.85
Cytoplasmic	214	230	0.40
Transmembrane Helix	231	254	0.51
Non-Cytoplasmic	255	257	0.56
Transmembrane Helix	258	278	0.85
Cytoplasmic	279	285	0.87
Transmembrane Helix	286	307	0.92
Non-Cytoplasmic	308	316	0.78
Transmembrane Helix	317	336	0.94
Cytoplasmic	337	346	0.92
Transmembrane Helix	347	370	0.91
Non-Cytoplasmic	371	408	0.93
Transmembrane Helix	409	429	0.92
Cytoplasmic	430	437	0.83
Transmembrane Helix	438	456	0.83
Non-Cytoplasmic	457	457	0.39
Transmembrane Helix	458	480	0.64
Cytoplasmic	481	533	0.57
Transmembrane Helix	534	553	0.90
Non-Cytoplasmic	554	822	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPSAPESK HKSSLNSSPW SGLMALGNSR HGPGAQCAHK AAGGAAPKPA PAGLSGGLSQ  60
   61 PAGWQSLLSF TILFLAWLAG FSSRLFAVIR FESIIHEFDP WFNYRSTHHL ASHGFYEFLN 120
  121 WFDERAWYPL GRIVGGTVYP GLMITAGLIH WILNTLNITV HIRDVCVFLA PTFSGLTSIS 180
  181 TFLLTRELWN QGAGLLAACF IAIVPGYISR SVAGSFDNEG IAIFALQFTY YLWVKSVKTG 240
  241 SVFWTMCCCL SYFYMVSAWG GYVFIINLIP LHVFVLLLMQ RYSKRVYIAY STFYIVGLIL 300
  301 SMQIPFVGFQ PIRTSEHMAA AGVFALLQAY AFLQYLRDRL TKQEFQTLFF LGVSLAAGAV 360
  361 FLSVIYLTYT GYIAPWSGRF YSLWDTGYAK IHIPIIASVS EHQPTTWVSF FFDLHILVCT 420
  421 FPAGLWFCIK NINDERVFVA LYAISAVYFA GVMVRLMLTL TPVVCMLSAI AFSNVFEHYL 480
  481 GDDMKRENPP VEDSSDEDDK RNPGNLYDKA GKVRKHVTEQ EKTEEGLGPN IKSIVTMLML 540
  541 MLLMMFAVHC TWVTSNAYSS PSVVLASYNH DGTRNILDDF REAYFWLRQN TDEHARVMSW 600
  601 WDYGYQIAGM ANRTTLVDNN TWNNSHIALV GKAMSSNETA AYKIMRSLDV DYVLIIFGGV 660
  661 IGYSGDDINK FLWMVRIAEG EHPKDIRESD YFTSQGEFRV DKAGSPTLLN CLMYKMSYYR 720
  721 FGEMQLDFRT PPGFDRTRNA EIGNKDIKFK HLEEAFTSEH WLVRIYKVKA PDNRETLDHK 780
  781 PRVTNIFPKQ KYLSKKTAKR KRGYIKNKLV FKKGKKISKK TL