YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76649620
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRRAPVNSQ QETRASSRQP AHTSEAGPAA QPLADTRRPA EGSLGACGRR GRPPGLREVT  60
   61 VRSQGPECRW GHCPRDFTER TVKGTTIENF RTAAREQQPP STGRLGAGPG QLPWQPALKL 120
  121 AWSRHEARRT RKPCEAPRHT RIGRGLKPPN SPARFSHACS VNSAQDTYPG GKSLWSAGPA 180
  181 TQAALEEGCC GEIGVAGGAA RRSSAPRLAA WLLWASVFLS SPNYLSLRGF RTAPPDWGPQ 240
  241 TRFSASPWLT LTMTMGTARA FLYPKGLRLC SPPPRGSPSA ASHSVASHRG FGQDSSDHRR 300
  301 GTLKAGQSVA TFTLRPPEHL GRASRAASRE LLGHVPTTHF TEEKAKASEE PSRPMPAWVA 360
  361 LLLFWAAAEA SEDCPAACAC RALDTMGLQV DCRGRGLEVL PALPAPTREL LLTNNSLQSV 420
  421 PPGAFDHLPQ LQALDLAHNP WRCDCGLVYL RLWLEDRAPE QLLRLRCAGP AHAADRTPAQ 480
  481 LSGSELGGCG WTLRESWAGP GSWWDAALVV VAALGLALLV SLLCTIPVPR ASPR

Type	Start	End	Confidence
Cytoplasmic	1	207	0.77
Transmembrane Helix	208	227	0.74
Non-Cytoplasmic	228	243	0.86
Transmembrane Helix	244	263	0.68
Cytoplasmic	264	502	0.67
Transmembrane Helix	503	526	0.89
Non-Cytoplasmic	527	534	0.49