YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76650028
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLLPAQEA AKIYHTNYVR NSRAVGVMWG TLTICFSVLV MALFIQPYWI GDSVNTPQAG  60
   61 YFGLFSYCVG NVLSSELICK GGPLDFSSIP SRAFKTAMFF VALAMFLIIG SIICFSLFFV 120
  121 CNTATVYKIC AWMQLAAATG LMIGCLVYPD GWDSSEVRRM CGEQTGKYTL GHCTIRWAFM 180
  181 LAILSIGDAL ILSFLAFVLG YRQDKLLPDD YKADGKEPKG QWRVAGWHVV RQGQTYVAEA 240
  241 ACDRRVSSSP CTLRVSGERA LVQPGELGVA FPWKAALRLG LAITGESAGG ERSNGEQRDE 300
  301 LLWKEERQYL HSLSHPSAPP SPPTPSGPEV QRGRKSTFGP QRKSEAAGAL GLRLQQTCEA 360
  361 WCVAEVLLEE VTVSPTIEPP QTTHKLEHNY TREVLAPLQT F

Type	Start	End	Confidence
Cytoplasmic	1	24	0.96
Transmembrane Helix	25	46	0.91
Non-Cytoplasmic	47	58	0.79
Transmembrane Helix	59	79	0.80
Cytoplasmic	80	97	0.76
Transmembrane Helix	98	120	0.94
Non-Cytoplasmic	121	129	0.71
Transmembrane Helix	130	152	0.88
Cytoplasmic	153	176	0.79
Transmembrane Helix	177	198	0.92
Non-Cytoplasmic	199	401	0.86