YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76654204
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELILSFSTE TWVLLATGLV LLYLYGTYSY GLFKKLGVPG PRPLPYFGNI LSYRKGVCEF  60
   61 NEECFKKYGK IWGIFEGKQP LLVITDPDMI KTVLVKECYS VFTNRRVFGP SGVMKNAISV 120
  121 AEDEQWKRIR TLLSPTFTSG KLKEMFPIIG KYGDVLVRNL RKEAEKGTSV DIKDIFGAYS 180
  181 MDVITSTSFG VNIDSLGNPQ DPFVENVKKL LRFSILDPFL LAVVLFPFLV PILDVLNITI 240
  241 FPKSAVNFFT KSVKRIKESR LKDNQKPRVD FLQLMINSQN SKETDNHKAL SDQELIAQSI 300
  301 IFIFAGYETT SSTLSFLLYI LATHPDVQQK LQEEIDATFP NKAPPTYDVL AQMEYLDMVV 360
  361 NETLRMFPIA IRLERLCKKD VEIHGVSIPK GTTVMVPISV LHKDPQLWPE PEEFRPERFS 420
  421 KKNKDSINPY VYLPFGTGPR NCIGMRFAIM NMKLAIVRVL QNFSFKPCKE TQIPLKISSQ 480
  481 GVLRPEKPVV LKVVLRDGTI SGA

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.62
Transmembrane Helix	12	32	0.74
Cytoplasmic	33	217	0.71
Transmembrane Helix	218	238	0.72
Non-Cytoplasmic	239	503	0.77