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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76655581
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRHLASLLL LLRLLQHFRD GDGSGTLEEM PLQFTHFQYN VTVHENSAAK TYVGHPVKMG  60
   61 IYMTNPLWEL RYKIISGDNE NLFKAEEYVL GDFCFLRIRT KGGNTAILNR EVKDHYTLIV 120
  121 KAVEKNTNAE ARTQVRVQVL DTNDLRPLFS PTSYSVSLPE NTAIRTSIAR VSATDADIGT 180
  181 NGEFYYSFKD RTDMFAIHPT SGTIVLTGRL DYTETSVYEM EILAVDRGMK LYGSSGISSM 240
  241 AKLTVHVEQA NACAPVITAV TSSPSELDRD PTYAIVTVDD CDQGANGEVA SLSIVAGDLL 300
  301 QQFRTVRSSP GSREYKLKAT GAIDWDSHPF GYNLTLQAKD KGTPPQFSSV KVIHVISPRF 360
  361 KAGPVRFEKE VYRAEISEFA PPHTPVVMVK ATPSYPHLKY VFKSTPGKAK FSLNHNTGLI 420
  421 SILEPLKRQQ ASHFELEVTT SDRKASTRVL VKVLSANSHP PEFTQTAYKA SFDENVPIGT 480
  481 TVMSVSAVDP DEGENGYVTY SIANLNHVPF VINHFTGAVS TSENLDYELM PRVYTLRIRA 540
  541 SDWGSPYRRE IEILATLTLN NLNDNTPLFE KINCEGTIPR DLGVGEQITT VSAIDADELQ 600
  601 LVRYQIEAGN ELDLFSLNPN SGVLSLKQSL MDGLGAKVSF HSLRITATDG ENFATPLYIN 660
  661 MTVAALRKPV SLQCEETGVA KMLAEKLLQA NKLHSQGEVE DVFFDSHSVN AHAPQFRSTL 720
  721 PAGIQVKENQ PVGSSLLVMN ATDLDTGFNG KLVYAVSGGN EDSCFIMDME TGMLKILSPL 780
  781 DRETTDRYTL NITVSDLGLP QRAAWHLLEI RVLDANDNPP EFLQESYFVE VSEDKEINSE 840
  841 IIQVEATDKD LGPNGHVRYS ILTDTDKFSI DSMTGVVKIL NPLDREEQQV HYLKVEARDQ 900
  901 AREEPQLLST VILKVSLDDV NDNPPKFIPP NYRVKVREDL PEGTIIMWLE AHDPDLGQSS 960
  961 QVRYSLLDHG EGNFDVDKLS GAVRIIQQLD FEKKQVYNLT VRAKDKGKPI SLSSTCYVEV1020
 1021 EVIDVNENLH PPVFPSFVEK GAVKENAPLG SSVMKVSARD EDMGRDGEIH YSIRDGSGVG1080
 1081 VFRIDEETGV IETSDRLDRE STSHYWLTVY ASDQGVVPLS SFVEVYIEVE DVNDNAPQTS1140
 1141 EPVYYPEIME NSPKDVSVVQ IEAFDPDSSS DDKLTYKITS GNPQGFFSIN SKTGLITTTA1200
 1201 RKLDREQQDE HILEVTVTDN GSPPKSTITR VIVKILDEND NKPQFLQKFY KIRLPEREKP1260
 1261 ERERNAKREP LYRVIATDKD EGPNAEISYS IEEGNEHGKF FIEPKTGVVL SKKFSGAGEY1320
 1321 DILSIKAVDN GRPQKSSTTR LHIEWISKPK PSLEPISFEE SFFTFTVMES DPVAHMIGVI1380
 1381 SVEPPGIPLW FDIIGGNYDS HFDVDRGTGT IIIAKPLDAE QKSNYNLTVE ATDGTTTILT1440
 1441 QVFIKVIDTN DHRPQFSTSK YEVVIPEDTV PETEILQISA VDKDEKNKLI YTLQSSIDPL1500
 1501 SLKKFRLDPA TGSLYTSEKL DHEAIHQHIL TVMVRDQDVP VKRNFARIVV NVSDTNDHAP1560
 1561 WFTSSSYEGR VYESAAVGSV VLQVTALDKD KGKNAEVLYS IESGNIGNSF TIDPILGSIK1620
 1621 TARELDRSNQ VAYDLMVKAT DRGDPPMSEI TSVRVFVTIA DNASPKFTSK EYSVEISETV1680
 1681 GIGSFVGMVT AHSQSSVVYE IKDGNVADAF DINPHSGSII TQKALDFETL PIYTLTIQGT1740
 1741 NMAGLSTNTT VLVHLLDEND NLPLFVQAEY TGLISESASI NSVVLTDRNV PLVIRATDAD1800
 1801 RESNALLVYH IVEPSVHKYF TIDSSTGAIH TVLSLDYEET STFHFTVQVH DMGTPRLFAE1860
 1861 YAANVTIHVI DINDCPPVFS TSLYEASLLL PTYRGVKVVA VNATDADSSA FSQLMYSITE1920
 1921 GNIGEKFLMD RKTGTITVQN TTQLRSRYEL TVRASDGRFA SFAAIKINVK ESKESQLKFT1980
 1981 QDFYSAIVKE NSTEARTLAV ITALGNPINE PLFYHILNPD PRFRISRTSG VLSTTGIPFD2040
 2041 REQQEAFDVV VEVTRERKPP AVAHVIVKVV IEDQNDNAPV FVNLPYYALV KVDAAVGQVI2100
 2101 RHVTAVDRDS GRNGEVHYFL KERHEHFQIG SSGEISLKKP FEPDTLNKEY LITVVARDGG2160
 2161 DPAFSAEVIV PITVMNKAMP VFEKPFYSAE IPENAQLHSP VVHVQANSPE GLKVHYSITE2220
 2221 GDPFSQFTVN FNTGVISVVA PLDFESHPAY KLSIRATDSL TGAHAEVFVD IIVEDINDNP2280
 2281 PVFAQQSYAT TLSEASVIGT SVVQVRATDA DSEPNRGISY HMVGNHSKSH DHFHVDSGTG2340
 2341 LISLVRTLDY EQFRQHQISV RAVDGGMPPL SSDVVVTVDV TDLNDHPPLF DQQLYEARIS2400
 2401 EHAAHGHFVT CVRAYDADSS DADKLEYSIL SGNDHKNFVI DGKTGIITLS NLRRHALKPS2460
 2461 YSLQVSASDG VFRSSAQVHV TVIGGNLHSP LFLQNEYEVE LAENAPLHTL VTEVKASDGD2520
 2521 SGIYGHVTYH IVNDFAKDRF YTNERGQIFT LEKLDRETPA EKVIPIRFMA KDAGGKVAFC2580
 2581 TINVILTDDN DNAPQFRATK FEVNIGSSAP KGTSVIKVLA SDADEGSNAD ITYAIEADSE2640
 2641 SVKENLEINR ASGVITTKES LIGLENEVFT FFVRAVDNGS PQRESVVPVY VKVLPPEMRL2700
 2701 PRFSEPFYTY TVSEDVPIGT EIDLIRAEHS GTVLYSLVKG NTPESNRDEF FVIDRQSGRL2760
 2761 KLEKSLDHET TKWFQFSVLA RCTHGDYELV ASVDVSIQVK DTNDNSPVLE SSPYEAFIVE2820
 2821 NLPAGSRVIQ IRASDLDSGS NGQVMYNLDQ SQSVDVIESF AVNMETGWIT TLRELDHEKR2880
 2881 DSYQIKVVAS DHGEKVQLSS TAIVDVTVTD VNDSPPRFTA EIYKGTVSED DPPGGVIAIV2940
 2941 STTDADSEEI NRQVTYYITG GDPLGQFAIE NIQNEWKVYV KKPLDREERD SYLLTITATD3000
 3001 GTFSSKAIVE VKVLDANDNT PVCEKTLYSD TIPEDAFPGK LIMQVSATDA DIRSNAEITY3060
 3061 TLFGPGAEKF KLNPDTGELK TSAPLDREEQ AAYHLLVKAT DGGGRFCQAS VVLTLEDVND3120
 3121 NAPEFSADPY TITVFENTEP GTLLTRVQAT DADAGLNRKI SYSLLNSADG QFSINELSGI3180
 3181 IQLEKPLDRE LQAVYTLTLK AVDHGLPRRL TATGTIVISV LDINDNPPVF EYREYGATVS3240
 3241 EDILIGTEVL QVYAASRDIE ANAEITYSII SGNEHGKFSI DSKTGAIFII ENLDYESSHE3300
 3301 YYLTVEATDG GTPSLSDVAT VSINVTDIND NAPVFSQDTY TAVVSEDAVL EQSVITVMAD3360
 3361 DADGPSNSHI HYAIIDGNQG SPFTIDPARG EVKVTKLLDR ETISGYTLTV QASDNGSPPR3420
 3421 VTTTTVNIDV SDVNDNAPVF SRGNYSLIIQ ENKPVGFSVL QLVVTDRDSS HNGPPFFFSI3480
 3481 VSGNEEGAFE VNQQGALLTA AAINRKVKDH YLLHVKVADN GKPQLSSLTY IDIRVIEESV3540
 3541 YPPAILPLEI FITAFGEEYS GGVIGKIHAT DQDVYDTLTY SLDPQMDSLF SVSSTGGKLI3600
 3601 AHKKLDIGQY LLNVSVTDGK FTTAADITVQ VRQVTQEMLN QTVAVRFANL TPEEFVGDYW3660
 3661 RNFQRALRNI LGVRRNDIQI VSLQPAEPHP HLDVLLFVER SGVTHVSTRQ LLQKINSSVS3720
 3721 DVEEIIGVRI LEVFRKLCAG LDCPWKFCDE KVSVDESVMS THSTARLSFV TPRHRRMAVC3780
 3781 LCREGKCPLV HHGCEDNPCP EGSECVTDPR EETYTCVCPG GKSGQCPGES TSSSGIGQFM3840
 3841 LPHCLSVTGS ASVTFTGNSF VKYRLMENEN KLEMKLTMRL RTYSAHAVVM YARGTDYSIL3900
 3901 EIHNGRLQYK FDCGSGPGIV SVQSIQVNDG LWHAVSLEVN GNYARLVLDQ VHTASGTAPG3960
 3961 TLKTLNLDSH VYFGGHVRQQ GSRHGRSPQV GNGFRGCMDS IYLNGQELPL NNRPRSYAHI4020
 4021 EESVDVSPGC LLTATEDCSS SPCQNGGVCH PSPTGGYYCK CNTLYVGTYC EVSVNPCSSN4080
 4081 PCLYGGTCIV DNGDFVCQCR GLYSGQRCQL SPYCKDEPCK NGGTCFDSLD GAVCQCDSGF4140
 4141 RGERGSSPAR DGTRVSCAGR CQSDVDECAG NPCRNGALCE NTHGSYHCNC SHEYKGKHCE4200
 4201 DVAPNQYVST PWNIGLAEGI GIVVFITGIF LLVLVFVFCR KMISRKKKPQ PEPEDKHLGP4260
 4261 SAAFLQRPYF DSKLNKNIYS DIPPQVPVRP ISYTPSIPSD SRNNLDRNSF EGSAIPEHPE4320
 4321 FSTFNPESMH GHRKAVAVCS VAPNLPPPPP SNSPSDSDSI QKPSWDFDYD SKNGFLLFDK4380
 4381 MSLTSRHLLP SWHPYSARES LSEVHSLSSF QSESCDDNAS IVTVIHLVNA VVDMVTEEGI4440
 4441 VVCTPLYSAD PNAIDTDYYP GGYDIESDFP PPPEDFPGAD ELPPLPPEFS DQFESIHPPR4500
 4501 DAPAAGSPGS ASRGRQRFHP NQYLPSFYAV DLSEPQKAGA GDGSARREPY APYPAGYPRT4560
 4561 FEAPAVESLP LSVYASTASC SDVSACCEAE SEVMMSDYES GDDGPFEEVT VPPLDSQQHT4620
 4621 EV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle