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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|76658979
Protein type: Transmembrane
Type Confidence: 0.94
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSPHPEEE GIPIWSLRSP SFPAAAVTCK APLSPALRPG AGTLLLSRGR EGYRPGWPMG  60
   61 ARGSGQHRPS APAHGDLALS CKEKAKKFLL PARRASVRGR CSHCNSATAG RCFRFPCGCP 120
  121 GARKSSAAWT KKKGAYLRAR GGGRAPAAPS AGIHYRLEVG AGPRVSAACG DPGRARSCGT 180
  181 TMGAPRVRAL AAALGLLLCE VLGHAGPAEG GGLEALGPPS GVGAEHQCPT PCRCFGDLLD 240
  241 CSRQRLAHLP EPLPSWIARL DLSHNRLSFI KASSLSHLHS LREVKLNNNE LETIPNLGPV 300
  301 TANITLLSLA GNKIVEILPE HLRQFQSLET LDLSGNNISE LKTALPPLQL KYLYINSNRV 360
  361 TSMEPGYFDN LASTLLVLKL NRNRISALPP KMFKLPQLQH LELNRNKIKN IDGLTFQGLG 420
  421 ALKSLKMQRN GVTRLMDGAF WGLSNMEILQ LDHNNLTEIT KGWLYGLLML QELHLSQNAI 480
  481 SRISPDAWEF CQKLSELDLT YNHLSRLDDS SFLGLSLLNT LHIGNNRVNY IADCAFRGLS 540
  541 SLKTLDLKNN EISWTIEDMN GAFSGLDKLK RLILQGNRIR SITKKAFTGL DALEHLDLSD 600
  601 NAIMSLQGNA FSQMKKLQQL HLNTSSLLCD CQLKWLPQWV AENNFQSFVN ASCAHPQLLK 660
  661 GRSIFAVSPD GFVCDDFPKP QITVQPETQS AIKGSNLSFI CSAASSSDSP MTFAWKKDNE 720
  721 LLHDAEMENY AHLRAQGGEV MEYTTILRLR NVEFTSEGKY QCVISNHFGS SYSVKAKLTV 780
  781 NMLPSFTKTP MDLTIRAGAM ARLECAALGH PAPQIAWQKD GGTDFPAARE RRMHVMPEDD 840
  841 VFFIVDVKIE DIGVYSCTAQ NSAGSISANA TLTVLETPSF LRPLLDRTVT KGETAVLQCI 900
  901 AGGSPPPRLN WTKDDSPLVV TERHFFAAGN QLLIIVDSDI SDAGKYTCEM SNTLGTERGH 960
  961 VRLSVIPTPT CDSPQMTASS LDDDGWATVG IVIIAVVCCV VGTSLVWVVI IYHTRRRNED1020
 1021 CSITNTDETN LPADIPSYLS SQGTLADRQD GYISSENGSH HQFVTSSGGG FFLPQHDSNG1080
 1081 TCHIDNSSEA DVEAATDPFL CPFLGPSGPV YLKGSVYGSD PFEAYHTGCG PDLRSALMDH1140
 1141 YEPSYIKKKE CYPCPHPSEE SCEQSVSDTG WPSHAKKLLS SSYSQHEGPG MNNLCLNKSS1200
 1201 ADFSPSPEPP SVTLSNSFMG TFGKPLRRPH LDAFSSSGQS SDCQPRAFHL KARSSPNLDY1260
 1261 ESEEDGKERT DFQQENHTCT HKQTLESHRT SNFQSFDLDT 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle