YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|155372093, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDLDDSTYR KYIKMITNIV ILSLIICISS AFWIMSMTAS TYYGNFQPVS PWRWLFSVVV  60
   61 TVLIVSNGFK KKSLDHSGAL GGLVVGFILT IANFSFFTSL VTFFLSSSKL TKWKGEAKKH 120
  121 LDSEYKEGGQ RNWIQVFCNG AVPTELALLY MIESGPGEIP IDFSRQHTAS WMCLSLLAAL 180
  181 ASSAGDTWAS EVGPVLSKST PRLITTWEKV PVGTNGGVTV VGLASSLLGG TFVGITYFLT 240
  241 QLVFVNDLDI SAPQWPIIAF GGLAGLLGSI VDSYLGATMQ FSGLDESTGM VVNSPGKEVK 300
  301 YIAGKPILDN NAVNLFTSVL VALLLPTAAW GFWPRQ

Type	Start	End	Confidence
Cytoplasmic	1	15	0.93
Transmembrane Helix	16	37	0.89
Non-Cytoplasmic	38	50	0.81
Transmembrane Helix	51	69	0.87
Cytoplasmic	70	78	0.77
Transmembrane Helix	79	101	0.88
Non-Cytoplasmic	102	132	0.86
Transmembrane Helix	133	152	0.52
Cytoplasmic	153	167	0.55
Transmembrane Helix	168	189	0.79
Non-Cytoplasmic	190	216	0.68
Transmembrane Helix	217	240	0.84
Cytoplasmic	241	254	0.53
Transmembrane Helix	255	276	0.89
Non-Cytoplasmic	277	311	0.68
Transmembrane Helix	312	333	0.91
Cytoplasmic	334	336	0.61