YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76662861
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	383	0.85
Transmembrane Helix	384	406	0.88
Non-Cytoplasmic	407	433	0.85
Transmembrane Helix	434	453	0.54
Cytoplasmic	454	541	0.51
Transmembrane Helix	542	576	0.75
Non-Cytoplasmic	577	596	0.54
Transmembrane Helix	597	619	0.86
Cytoplasmic	620	630	0.63
Transmembrane Helix	631	649	0.94
Non-Cytoplasmic	650	718	0.77
Transmembrane Helix	719	741	0.85
Cytoplasmic	742	829	0.98
Transmembrane Helix	830	852	0.90
Non-Cytoplasmic	853	858	0.74
Transmembrane Helix	859	877	0.92
Cytoplasmic	878	887	0.81
Transmembrane Helix	888	910	0.90
Non-Cytoplasmic	911	929	0.95
Transmembrane Helix	930	953	0.74
Cytoplasmic	954	976	0.69
Transmembrane Helix	977	1001	0.76
Non-Cytoplasmic	1002	1020	0.68
Transmembrane Helix	1021	1043	0.91
Cytoplasmic	1044	1047	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPDGGQSFR SPEGLSISSS GGTDVTPSAN FASMVQVHAQ WKPTAPDPLL SLLGGLDGKS  60
   61 LWREKTVTSI STWLPSIKQS CMGHTARVRQ QGWEQQWGGV VGGGGDARRD VCGCGQAGRR 120
  121 TVEQLGARLP PGTTSIVIQR SHLQLDFEEE PTGGCEQGGR LLYPCIYKAV PCNLNHLGNA 180
  181 IPEVCMSSFF LFDPSEKSCN RNMHLENKDG RLASGRLEME LHQTSAPTSA GLGGSGLVEL 240
  241 NTSNRRPQQG VGRADSLSPY HNGAAGQSCW ATVDQDFGSF LKERRSHPPF SQVFSSRSKE 300
  301 PCFTENTPLL RNFSQEKGSW CMPVCHPEFI TGEESWEDSS TECEGRSLLS RELAGSSESA 360
  361 FLEKGELLDS AHIRFRLAKL RCCVQWLKVT GLFVFVVLCS ILFSLYPDQG KLWQLLAVSP 420
  421 LESYSVNLSS HADSMLLQVG LAGALVAGSP SHLGREEHVM VEVTQANTPG SRRRRPQQVT 480
  481 HNWTIFLNPS GSEHVVVSRT FEVLSREPVS ISIRASLQQT QIVPLLMTHQ YLRASVEAQV 540
  541 TIAAVILAGV YVLIIFEIVH RTLAAMLGSL SALAALAVIG DRPSLTHVVE WIDFETLALL 600
  601 FGMMILVAIF SETGFFDYCA VKVYQLSRGR VWTMIFMLCL VAAVLSAFLD NVTTVLLFTP 660
  661 VTIRLCEVLN LDPRQVLIAE VIFTNIGGAA TAIGDPPNVL IVSNQELRKM GAYFGACSLH 720
  721 EFASVCLANL FIYMILNLPL WFRLLLKPQL SFPAELKHEI HVWRLTAQHI SPASREETAV 780
  781 RGMLLEKVLT LEHLLAQRLH SFHRQISQED KNWETNIQEL QRKHRISDKI LLAKCLTVLV 840
  841 FVIFMFFLNS FIPGVHLDLG WIAILGAIWL LILADIHDFE IILHRVEWAT LLFFAALFVL 900
  901 MEALAHLHLI EYVGEQTALL IKMVPEDQRL TAAIILVVWV SGITSSLIDN IPFTATMIPV 960
  961 LLNLSRDPEV SLPAPPLMYA LALGSCLGGN GTLIGASANV VCAGIAEQHG YGFSFMEFFR1020
 1021 LGFPMMVVSC MVGMCYLLVA HIVMGWN