YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76694926
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPKENSTVV TEFILAGITD DPQLQIPLFL VFTLIYLLTL VGNLGVITLI LLDSRLHTPM  60
   61 YVFLSHLSLM DFGYSTAVTP KVMAGFLTGD KVISYKACAA QLYFFAVFLI VETFLLASMA 120
  121 YDRHAAVCKP LHYTNIMTPR VCAWMVVGCY VFGFLEASVH TWNAFSLSFC RSNVIDHFFC 180
  181 DATPLLALSC SDSIRSEMVF FILAGFNIIF TIMVILISYL FIFVTILRVH SSEGHQKAFS 240
  241 TCASHLTSVS IFYGTGAFMY LQPGPRHSMS TDKMASVSYA IVIPMLNPLI YSLWNKEVKR 300
  301 ALKRLLDGGG ARGRVDPGPR HSMSTDKMAS VSYAIVIPML NPLIYSLRNK EVKRALKKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.79
Transmembrane Helix	28	52	0.87
Cytoplasmic	53	59	0.72
Transmembrane Helix	60	78	0.75
Non-Cytoplasmic	79	98	0.76
Transmembrane Helix	99	121	0.87
Cytoplasmic	122	140	0.82
Transmembrane Helix	141	159	0.92
Non-Cytoplasmic	160	202	0.90
Transmembrane Helix	203	227	0.86
Cytoplasmic	228	240	0.80
Transmembrane Helix	241	261	0.90
Non-Cytoplasmic	262	274	0.89
Transmembrane Helix	275	294	0.85
Cytoplasmic	295	359	0.83