YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77459532, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.58
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	75	0.47
Transmembrane Helix	76	98	0.90
Cytoplasmic	99	105	0.59
Transmembrane Helix	106	126	0.89
Non-Cytoplasmic	127	131	0.50
Transmembrane Helix	132	152	0.86
Cytoplasmic	153	159	0.64
Transmembrane Helix	160	185	0.87
Non-Cytoplasmic	186	201	0.64
Transmembrane Helix	202	222	0.85
Cytoplasmic	223	239	0.41
Transmembrane Helix	240	261	0.73
Non-Cytoplasmic	262	269	0.58
Transmembrane Helix	270	291	0.94
Cytoplasmic	292	297	0.59
Transmembrane Helix	298	322	0.73
Non-Cytoplasmic	323	323	0.33
Transmembrane Helix	324	346	0.62
Cytoplasmic	347	363	0.79
Transmembrane Helix	364	385	0.90
Non-Cytoplasmic	386	404	0.83
Transmembrane Helix	405	427	0.81
Cytoplasmic	428	458	0.92
Transmembrane Helix	459	483	0.90
Non-Cytoplasmic	484	501	0.85
Transmembrane Helix	502	523	0.94
Cytoplasmic	524	569	0.98
Transmembrane Helix	570	591	0.90
Non-Cytoplasmic	592	601	0.87
Transmembrane Helix	602	624	0.90
Cytoplasmic	625	630	0.90
Transmembrane Helix	631	651	0.95
Non-Cytoplasmic	652	657	0.75
Transmembrane Helix	658	679	0.92
Cytoplasmic	680	699	0.97
Transmembrane Helix	700	722	0.91
Non-Cytoplasmic	723	758	0.95
Transmembrane Helix	759	777	0.95
Cytoplasmic	778	816	0.95
Transmembrane Helix	817	841	0.83
Non-Cytoplasmic	842	848	0.84
Transmembrane Helix	849	868	0.94
Cytoplasmic	869	883	0.85
Transmembrane Helix	884	907	0.88
Non-Cytoplasmic	908	926	0.87
Transmembrane Helix	927	949	0.90
Cytoplasmic	950	966	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIVLLLLP FLGSCLAAVL PHNARNAESL LAGLVALIGT VSVALLYPQI AHGGVIREEF  60
   61 TWLPSLGLNF VLRMDGFAWL FSMLVLGIGT LVSLYARYYM SPDDPVPRFF AFFLAFMGAM 120
  121 LGLVISGNLI QIVFFWELTS LFSFLLIGYW HHRHDARRGA YMALMVTGAG GLCLLAGVMI 180
  181 LGHVVGSYDL DKVLAAGDQI RAHALYPILL PLILIGALSK SAQFPFHFWL PHAMAAPTPV 240
  241 SAYLHSATMV KAGVFLLARL WPSLSGSEEW FYIVSGAGAA TLLLGAYCAM FQNDLKGLLA 300
  301 YSTISHLGLI TLLLGLNSPL AAVAAVFHIL NHATFKASLF MAAGIIDHES GTRDIRKLNG 360
  361 LFKLIPFTAT LAMVASASMA GVPLLNGFLS KEMFFAETVF INATAWVETS LPIVATIAGM 420
  421 FSVAYSLRFT VDVFFGPTAT DLPHTPHEPP RWMRAPVELL VFTCLLVGIF PAQVVGPLLA 480
  481 AAALPVVGGV LPEYSLAIWH GLNAPMIMSL IAMSGGIVVY LLLRNQLKRG RFKYPPLAGR 540
  541 LNGKRMFERS LVAMMRLARR LERRIGTKRL QTQLFLMVLA AVLAGLIPML HSNLSWGDRP 600
  601 KIPGSIVFVT LWLLAIACAL GAAWQAKYHR LAALTMVSVC GLMTCVTFVW FSAPDLALTQ 660
  661 LVVEVVTTVL ILLGLRWLPR RIEEVSPLPS SLRKARVRRL RDLLLSIAVG GGMALLSYAM 720
  721 LTRQTPNDIS SFYLSRALPE GGGSNVVNVM LVDFRGFDTL GEITVLAAVA LTVFALLRRF 780
  781 RPPKESLQLP AQQRLLAPDV VTDLVNPRSA SDTALGFMMV PAVLVRLLLP IALVVSFYLF 840
  841 MRGHNQPGGG FVAGLVMSVA FILQYMVAGT QWVEAQMSLR PLRWMGTGLL FATLTGLGAM 900
  901 AVGYPFLTTH TWHFSLPLLG DIHIASALFF DIGVYAVVVG STLLILTALA HQSVRGHKTA 960
  961 AAKGAV