YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77459608, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.88
Transmembrane Helix	21	43	0.89
Cytoplasmic	44	55	0.95
Transmembrane Helix	56	79	0.87
Non-Cytoplasmic	80	96	0.93
Transmembrane Helix	97	120	0.88
Cytoplasmic	121	126	0.89
Transmembrane Helix	127	148	0.94
Non-Cytoplasmic	149	183	0.97
Transmembrane Helix	184	208	0.89
Cytoplasmic	209	218	0.90
Transmembrane Helix	219	238	0.91
Non-Cytoplasmic	239	325	0.97
Transmembrane Helix	326	346	0.93
Cytoplasmic	347	360	0.81
Transmembrane Helix	361	380	0.95
Non-Cytoplasmic	381	408	0.90
Transmembrane Helix	409	430	0.88
Cytoplasmic	431	471	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNLEALDLA RIQFAFTVSF HIIFPAITIG LASFLAVLEG LWLKTGNDTY RDLYHFWSKI  60
   61 FAVNFGMGVV SGLVMAYQFG TNWSGFSDFA GSVTGPLLTY EVLTAFFLEA GFLGVMLFGW 120
  121 NRVGRGLHFF ATVMVAIGTL ISTFWILASN SWMQTPQGFE IVDGRVMPVD WLAIVFNPSF 180
  181 PFRLAHMAIA AFVATAFFVG ASAAWHLLRG NDSKPVRKMF SMALWMALIV APIQAVVGDA 240
  241 HGLNTVEHQP AKIAAIEGHW ENADNGPTPL VLFGIPDMQA EKTKYAIEIP YLGSLILTHS 300
  301 LDKQIPALKS FPKEDRPNST VIFWSFRVMA GLGMLMILVG VVGLALRRNG KVYRHRGFQR 360
  361 LVLLMGPSGL IALLAGWITT EVGRQPWVVY GLMRTHDAAS HHSVAQMSTS LALFVVIYCS 420
  421 VFTVGIGYMM KLVSKGPQPH HEHPPEGTQV QTPRRPLSAV TDNLESATRI H